Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq411 408 1e-108
>seq411
Length=256942
Score = 408 bits (452), Expect = 1e-108
Identities = 1080/1629 (66%), Gaps = 40/1629 (2%)
Strand=Plus/Minus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
|||||||||||||| ||| | |||||||| || |||| || || || |||| | ||
Sbjct 122880 GAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAG 122821
Query 363508 GCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAA 363565
|| || ||||| |||||||| || | | || || | ||||| ||||| ||||||
Sbjct 122820 GCAGCAATTGAGACATATAACCTGATGTCAG-GCAAATAC-TTCACACACGCTTCGCCAA 122763
Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625
|| | | | ||| || || | | |||| | ||||| ||||| | | | ||||
Sbjct 122762 CACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGA 122703
Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685
|||| ||| || || ||||||| ||||| || |||| |||||| | || || ||||
Sbjct 122702 AGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGA 122643
Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATTCGC 363744
|||| || || || ||| | |||||| |||| || || || |||||||
Sbjct 122642 ATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGC-CACCGGAGCTTACATTGCT 122584
Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804
|||||| || |||| || || | ||||| ||||| | ||||| |||| |||||
Sbjct 122583 GGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCC 122524
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
|| || || |||||||||||| ||||| || || || || || || ||||||||
Sbjct 122523 AGATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCA 122464
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATT 363923
|| || ||| |||| |||| ||||| ||||| ||||| ||||| || || ||| |
Sbjct 122463 TGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAG-GAAGAAGT 122405
Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983
|| || |||||||| ||||| || || ||| | | || | || |||||||| || ||
Sbjct 122404 TCGCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGA 122345
Query 363984 GGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037
|||||| ||| |||| | ||||| |||| || ||||||||| | ||
Sbjct 122344 A------AAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGA 122291
Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097
||| | ||||| || | | ||||||||||| |||||||| | ||||| |||| |||
Sbjct 122290 TGTCTATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCG 122231
Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157
||||| || |||||||| || |||| |||| | || | || | ||||| ||
Sbjct 122230 CAAGACCATCAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGG 122171
Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217
|| |||| ||| | ||||| ||| | |||||||| ||| ||||||| || | || ||
Sbjct 122170 AAACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111
Query 364218 TACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276
||| |||| | || |||||| || || |||||| | || ||| |||| || || |||
Sbjct 122110 TACCATTC-GAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGG 122052
Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG---TAAAAGATGGTA 364330
|| |||||| | || || || |||||||| | | ||| | || | ||||
Sbjct 122051 TCGCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGACATGAACAACGGTA 121992
Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAA 364388
| | |||| |||| | || | || || | | | || | | | || || ||||
Sbjct 121991 CCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGT-CAAG-AACCTGAACAA 121934
Query 364389 GGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCG 364448
| | ||||| || || || ||| |||| ||||| || || || | ||||| |
Sbjct 121933 GATCATCGAGGTCAACTACTACCCAGTTCCAGAAGCAAAGAAATCCAACTTCCGTCACAG 121874
Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508
|| |||| ||||||||| || || || ||||| || || || || || ||||
Sbjct 121873 ACCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTGCGTCTGCCATT 121814
Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568
|| || ||||| || ||| || | |||||||||| || || || |||||
Sbjct 121813 CGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCGC 121754
Query 364569 AATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628
|||||||||| |||| | || || | ||| ||| || || ||||| ||
Sbjct 121753 TTTGACTGCTTCCGTTGATCTCGCTAAGAAGCTTGGACCATACGAGACATACGAGGGATC 121694
Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688
|| | ||| |||| | | || | ||| | ||| |||||| ||| ||| | ||
Sbjct 121693 TCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGGGTGTCACTCCAACTGATCTCTG 121634
Query 364689 GAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744
| | |||||| | || | | ||| | ||| | |||||| |||||| | || |
Sbjct 121633 GGATTGGGATTCTCTGAAGCAACAA-ATCAAGCAATATGGTATCCGCAACAGTTTGCTTG 121575
Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804
|| || || |||||||| || ||| || || || || |||||| |||||||
Sbjct 121574 TT---GCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGTTCAACGAATGCTTCG 121518
Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864
| || | || ||| | || || || || || || | ||||| || | || || |
Sbjct 121517 AGCCATACACCTCCAACATCTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAAGTCGTCA 121458
Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924
| | | | ||||||||| || || || ||| |||| |||||||||
Sbjct 121457 ACCCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGAAGAATA 121398
Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984
|||||||| | | |||||| | || || |||| |||||| || | |||
Sbjct 121397 GAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACATCAAGG 121338
Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044
|| | ||||| ||||| |||||||| || ||| || || | | ||||| |||||||
Sbjct 121337 CTCTCTACAAGACCGTCTGGGAAATCTCTCAGCGTACCATCGTCCAGATGGCTGCCGATC 121278
Query 365045 GCGGTGCTT 365053
| |||||||
Sbjct 121277 GTGGTGCTT 121269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303338153223350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |