Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq411 408 1e-108 >seq411 Length=256942 Score = 408 bits (452), Expect = 1e-108 Identities = 1080/1629 (66%), Gaps = 40/1629 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 |||||||||||||| ||| | |||||||| || |||| || || || |||| | || Sbjct 122880 GAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAG 122821 Query 363508 GCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 || || ||||| |||||||| || | | || || | ||||| ||||| |||||| Sbjct 122820 GCAGCAATTGAGACATATAACCTGATGTCAG-GCAAATAC-TTCACACACGCTTCGCCAA 122763 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 || | | | ||| || || | | |||| | ||||| ||||| | | | |||| Sbjct 122762 CACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGA 122703 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 |||| ||| || || ||||||| ||||| || |||| |||||| | || || |||| Sbjct 122702 AGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGA 122643 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATTCGC 363744 |||| || || || ||| | |||||| |||| || || || ||||||| Sbjct 122642 ATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGC-CACCGGAGCTTACATTGCT 122584 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 |||||| || |||| || || | ||||| ||||| | ||||| |||| ||||| Sbjct 122583 GGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCC 122524 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || || |||||||||||| ||||| || || || || || || |||||||| Sbjct 122523 AGATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCA 122464 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATT 363923 || || ||| |||| |||| ||||| ||||| ||||| ||||| || || ||| | Sbjct 122463 TGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAG-GAAGAAGT 122405 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || |||||||| ||||| || || ||| | | || | || |||||||| || || Sbjct 122404 TCGCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGA 122345 Query 363984 GGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 |||||| ||| |||| | ||||| |||| || ||||||||| | || Sbjct 122344 A------AAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGA 122291 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| | ||||| || | | ||||||||||| |||||||| | ||||| |||| ||| Sbjct 122290 TGTCTATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCG 122231 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 ||||| || |||||||| || |||| |||| | || | || | ||||| || Sbjct 122230 CAAGACCATCAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGG 122171 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || |||| ||| | ||||| ||| | |||||||| ||| ||||||| || | || || Sbjct 122170 AAACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111 Query 364218 TACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 ||| |||| | || |||||| || || |||||| | || ||| |||| || || ||| Sbjct 122110 TACCATTC-GAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGG 122052 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG---TAAAAGATGGTA 364330 || |||||| | || || || |||||||| | | ||| | || | |||| Sbjct 122051 TCGCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGACATGAACAACGGTA 121992 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAA 364388 | | |||| |||| | || | || || | | | || | | | || || |||| Sbjct 121991 CCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGT-CAAG-AACCTGAACAA 121934 Query 364389 GGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCG 364448 | | ||||| || || || ||| |||| ||||| || || || | ||||| | Sbjct 121933 GATCATCGAGGTCAACTACTACCCAGTTCCAGAAGCAAAGAAATCCAACTTCCGTCACAG 121874 Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508 || |||| ||||||||| || || || ||||| || || || || || |||| Sbjct 121873 ACCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTGCGTCTGCCATT 121814 Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 || || ||||| || ||| || | |||||||||| || || || ||||| Sbjct 121813 CGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCGC 121754 Query 364569 AATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 |||||||||| |||| | || || | ||| ||| || || ||||| || Sbjct 121753 TTTGACTGCTTCCGTTGATCTCGCTAAGAAGCTTGGACCATACGAGACATACGAGGGATC 121694 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 || | ||| |||| | | || | ||| | ||| |||||| ||| ||| | || Sbjct 121693 TCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGGGTGTCACTCCAACTGATCTCTG 121634 Query 364689 GAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744 | | |||||| | || | | ||| | ||| | |||||| |||||| | || | Sbjct 121633 GGATTGGGATTCTCTGAAGCAACAA-ATCAAGCAATATGGTATCCGCAACAGTTTGCTTG 121575 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 || || || |||||||| || ||| || || || || |||||| ||||||| Sbjct 121574 TT---GCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGTTCAACGAATGCTTCG 121518 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 | || | || ||| | || || || || || || | ||||| || | || || | Sbjct 121517 AGCCATACACCTCCAACATCTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAAGTCGTCA 121458 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 | | | | ||||||||| || || || ||| |||| ||||||||| Sbjct 121457 ACCCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGAAGAATA 121398 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 |||||||| | | |||||| | || || |||| |||||| || | ||| Sbjct 121397 GAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACATCAAGG 121338 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 || | ||||| ||||| |||||||| || ||| || || | | ||||| ||||||| Sbjct 121337 CTCTCTACAAGACCGTCTGGGAAATCTCTCAGCGTACCATCGTCCAGATGGCTGCCGATC 121278 Query 365045 GCGGTGCTT 365053 | ||||||| Sbjct 121277 GTGGTGCTT 121269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338153223350