Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq61 89.7 4e-13 >seq61 Length=91600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| || | ||| || || |||||||| || ||||||||||||| Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | ||| ||||| || | || || || || ||||| || Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||| || | | | | ||||| | ||| Sbjct 25897 ATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 25838 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || || |||||||| |||||||| Sbjct 25837 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083433265750