Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq175 141 6e-29
seq234 140 2e-28
seq112 100 2e-16
>seq175
Length=20380
Score = 141 bits (156), Expect = 6e-29
Identities = 89/96 (93%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 8073 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 8132
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||||| ||||||||||||||||||||||||||||
Sbjct 8133 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 8168
>seq234
Length=7663
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6222 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6163
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6162 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6128
>seq112
Length=719005
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||||||||| || || |||||||||||||| || ||||| ||
Sbjct 201891 ACCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCT 201950
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| ||| | || || || || || || || || || | || || || || | ||
Sbjct 201951 CAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGG 202010
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || || || ||| ||| ||| ||| ||||| | | || || |||||
Sbjct 202011 AATACCCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAAC 202070
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 202071 CTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334943423993675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |