Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq411 205 1e-47 seq887 113 6e-20 >seq411 Length=256942 Score = 205 bits (226), Expect = 1e-47 Identities = 1196/1894 (63%), Gaps = 63/1894 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || |||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | || ||||| || ||||||||||| || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 |||| | | || | | | | | | || || || ||||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT--- 62263 | | || | |||| ||| || || ||| || || || | || |||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGA-AG---CATTCGTTGAA 121533 Query 62264 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322 ||||| ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593 Query 62323 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 62382 ||| ||| |||||| | || |||| ||||||| ||| ||||| | || || Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653 Query 62383 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62438 ||| || ||| || ||||| | |||| | ||||| | Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAG----ATCCCTCGTATGTCT 121709 Query 62439 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62498 |||||||||| ||||| ||| || ||| || || || ||| || || | Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769 Query 62499 TTTCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAA 62556 | || ||||||| | || |||| |||| || |||| | || ||||| | | Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGGCAGACGCA- 121826 Query 62557 GAGAATAAACG-CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 ||| | | | | || || | ||||||||||||| | | |||||||| || | | Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | || | | |||||||||| || || || || | || || || || || || || Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA- 62734 |||| | || | | || || | || || | || ||| | || | | || || Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGT-TGTT-CAT 122004 Query 62735 ---AACAT--GTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 ||| | || | || || ||||||| ||||| || ||||||| | | Sbjct 122005 GTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGC 122064 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | || | | ||||||||||| || || | ||||| || | ||| | || Sbjct 122065 GGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTG 122124 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 || |||||| ||| || |||||||| || || ||||| || | ||||| || | || Sbjct 122125 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTG 122184 Query 62908 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTT 62966 | ||| | ||| | | ||| | | || | ||||| || | ||| | ||| Sbjct 122185 GGCTTCGAGAATGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGC 122240 Query 62967 C-TCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 | || | ||| | ||||| | | ||||| || || || | |||| | || Sbjct 122241 CCTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAG 122298 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTT 63078 || || || || | || ||||||| | ||| | | ||| ||| || || || Sbjct 122299 ACCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTT 122355 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||| || ||||| || ||||| ||||| || ||||| | | | | ||| || || Sbjct 122356 CATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTT 122415 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || ||| ||| ||||| ||| || | | || ||| | ||||| || || | ||| Sbjct 122416 GCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTA 122475 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| || Sbjct 122476 GATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTT 122535 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 | ||||| | ||| |||| ||||| ||||| | || || || || | || || Sbjct 122536 GAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGC 122595 Query 63319 TCCACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374 ||| |||| ||||| | || ||||| |||| || || || || | ||||||| Sbjct 122596 TCCGGTGGCTCGAATTCTGTGGAC--ATTGA--GACCGATACCACCAGCATTCTTAGAGA 122651 Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | | || || || | ||| || ||||| || || |||||||||||| |||||| || Sbjct 122652 TCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAA 122711 Query 63435 GTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63493 || || || ||| | || ||| | | || || ||| || | || || ||| Sbjct 122712 TTAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAA 122770 Query 63494 GCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63553 ||||| || || |||| | || | || || || |||||||| |||| || |||||| Sbjct 122771 GCGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCC 122830 Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 ||||| || ||||| |||||||| | ||||||||| || | ||| ||| ||| Sbjct 122831 TCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTG 122890 Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 | | | | ||| ||| ||| | || || ||||| || || | ||| Sbjct 122891 CCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTG 122950 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 |||||||| ||||| | |||| |||| ||||||| Sbjct 122951 AAGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984 >seq887 Length=503426 Score = 113 bits (124), Expect = 6e-20 Identities = 289/438 (66%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||||| ||||| || || || || || || || || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| |||||||| |||| | || || | ||| | || | || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || ||||| || || ||| ||||||| | | ||||| || | ||| Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||||||||| | || | ||| || || || || || || || || || | | Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267 Query 32610 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 |||| |||| || | || || ||| | || || || | | || || | Sbjct 202266 --TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAA 202209 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | || ||| ||||||||||| | | |||||| |||||||| || || ||||||| || Sbjct 202208 AGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCA 202149 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | ||||||||||| || | ||| || || || || ||||| ||| ||||| || || | Sbjct 202148 TGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCT 202089 Query 32788 CTACTGCCGCAAAGGCAA 32805 | || || || || |||| Sbjct 202088 CAACGGCGGCGAATGCAA 202071 Score = 89.7 bits (98), Expect = 7e-13 Identities = 197/294 (67%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| |||||||| ||||| || || | || || || ||||| || || Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 ||||| |||||||||||||| | ||||| | ||| || |||||| || || || || Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 | || || || || || || || || ||| || || || || | || || || Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724 Query 33102 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 33157 || ||| ||||| | | ||| | || ||||| |||| | || || || | || Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | || || | ||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624673630000