Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq411 205 1e-47
seq887 113 6e-20
>seq411
Length=256942
Score = 205 bits (226), Expect = 1e-47
Identities = 1196/1894 (63%), Gaps = 63/1894 (3%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| || ||||| || || || | | || || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| || |||||||||||| || | ||| | ||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
||||| ||||| |||||| |||||| ||| | || || | || |||||||| | |
Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || || | |||||||| | || || || | ||| || || |||||| |
Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357
Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | || ||||| || ||||||||||| || || |||||||| || | || |
Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|||| | | || | | | | | | || || || ||||| || ||||||
Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT--- 62263
| | || | |||| ||| || || ||| || || || | || |||| ||
Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGA-AG---CATTCGTTGAA 121533
Query 62264 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322
||||| ||||||| || ||||| |||||||| || || | ||||| || | |
Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593
Query 62323 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 62382
||| ||| |||||| | || |||| ||||||| ||| ||||| | || ||
Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653
Query 62383 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62438
||| || ||| || ||||| | |||| | ||||| |
Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAG----ATCCCTCGTATGTCT 121709
Query 62439 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62498
|||||||||| ||||| ||| || ||| || || || ||| || || |
Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769
Query 62499 TTTCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAA 62556
| || ||||||| | || |||| |||| || |||| | || ||||| | |
Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGGCAGACGCA- 121826
Query 62557 GAGAATAAACG-CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615
||| | | | | || || | ||||||||||||| | | |||||||| || | |
Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886
Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675
| || | | |||||||||| || || || || | || || || || || || ||
Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946
Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA- 62734
|||| | || | | || || | || || | || ||| | || | | || ||
Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGT-TGTT-CAT 122004
Query 62735 ---AACAT--GTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787
||| | || | || || ||||||| ||||| || ||||||| | |
Sbjct 122005 GTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGC 122064
Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847
| || | | ||||||||||| || || | ||||| || | ||| | ||
Sbjct 122065 GGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTG 122124
Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907
|| |||||| ||| || |||||||| || || ||||| || | ||||| || | ||
Sbjct 122125 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTG 122184
Query 62908 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTT 62966
| ||| | ||| | | ||| | | || | ||||| || | ||| | |||
Sbjct 122185 GGCTTCGAGAATGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGC 122240
Query 62967 C-TCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021
| || | ||| | ||||| | | ||||| || || || | |||| | ||
Sbjct 122241 CCTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAG 122298
Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTT 63078
|| || || || | || ||||||| | ||| | | ||| ||| || || ||
Sbjct 122299 ACCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTT 122355
Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138
||| || ||||| || ||||| ||||| || ||||| | | | | ||| || ||
Sbjct 122356 CATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTT 122415
Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198
|| ||| ||| ||||| ||| || | | || ||| | ||||| || || | |||
Sbjct 122416 GCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTA 122475
Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258
||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| ||
Sbjct 122476 GATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTT 122535
Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318
| ||||| | ||| |||| ||||| ||||| | || || || || | || ||
Sbjct 122536 GAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGC 122595
Query 63319 TCCACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374
||| |||| ||||| | || ||||| |||| || || || || | |||||||
Sbjct 122596 TCCGGTGGCTCGAATTCTGTGGAC--ATTGA--GACCGATACCACCAGCATTCTTAGAGA 122651
Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434
| | || || || | ||| || ||||| || || |||||||||||| |||||| ||
Sbjct 122652 TCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAA 122711
Query 63435 GTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63493
|| || || ||| | || ||| | | || || ||| || | || || |||
Sbjct 122712 TTAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAA 122770
Query 63494 GCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63553
||||| || || |||| | || | || || || |||||||| |||| || ||||||
Sbjct 122771 GCGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCC 122830
Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613
||||| || ||||| |||||||| | ||||||||| || | ||| ||| |||
Sbjct 122831 TCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTG 122890
Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673
| | | | ||| ||| ||| | || || ||||| || || | |||
Sbjct 122891 CCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTG 122950
Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707
|||||||| ||||| | |||| |||| |||||||
Sbjct 122951 AAGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984
>seq887
Length=503426
Score = 113 bits (124), Expect = 6e-20
Identities = 289/438 (66%), Gaps = 4/438 (1%)
Strand=Plus/Minus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
|||||||| ||||| ||||| || || || || || || || || | | || || ||
Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
|||||||| |||||||| |||| | || || | ||| | || | || |
Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549
| | ||| || ||||| || || ||| ||||||| | | ||||| || | |||
Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327
Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609
| ||||||||| | || | ||| || || || || || || || || || | |
Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267
Query 32610 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667
|||| |||| || | || || ||| | || || || | | || || |
Sbjct 202266 --TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAA 202209
Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727
| || ||| ||||||||||| | | |||||| |||||||| || || ||||||| ||
Sbjct 202208 AGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCA 202149
Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787
| ||||||||||| || | ||| || || || || ||||| ||| ||||| || || |
Sbjct 202148 TGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCT 202089
Query 32788 CTACTGCCGCAAAGGCAA 32805
| || || || || ||||
Sbjct 202088 CAACGGCGGCGAATGCAA 202071
Score = 89.7 bits (98), Expect = 7e-13
Identities = 197/294 (67%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| |||| |||||||| ||||| || || | || || || ||||| || ||
Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041
||||| |||||||||||||| | ||||| | ||| || |||||| || || || ||
Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784
Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101
| || || || || || || || || ||| || || || || | || || ||
Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724
Query 33102 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 33157
|| ||| ||||| | | ||| | || ||||| |||| | || || || | ||
Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665
Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| || || | ||||| ||||||||||| ||||| || ||||| | ||||||
Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633624673630000
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