Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq61 107 2e-18 seq112 98.7 9e-16 >seq61 Length=91600 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| |||| || ||||| || Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| |||||||||||| Sbjct 25851 GACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGCATTCCACCTGAC 25907 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || || || ||||| ||| | ||||| | ||||| | ||| ||| Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || || || || || || ||| | || || | || | |||||| Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018 >seq112 Length=719005 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || ||| | || || ||||| || Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| |||| | ||| || || || || |||||||| ||||| Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCA-GGATAAGGAGGGTATTCCACCAGACCA 202000 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || || || |||| || || || |||| ||||| Sbjct 201999 GCAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAA 201940 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || ||||| || ||| || || || ||| Sbjct 201939 CATCCAAAAGGAGAGCACACTGCACTTGGTG 201909 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCA 25089 ||||||| | || || ||||| |||||||||||||| || || || | || | ||| Sbjct 202821 CCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGA--CAATGTCAAATCCAAGATTCA 202764 Query 25090 CTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAG 25149 ||||| ||||| ||||| || || || || || | ||||| ||||| || || | | Sbjct 202763 -AGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAGCAGCTCG 202705 Query 25150 AAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGC 25209 | || | |||||| | |||||||| || ||||| || ||||| || ||||| || | Sbjct 202704 AGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCATTTGGTTC 202645 Query 25210 T 25210 | Sbjct 202644 T 202644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | ||||| || |||| || | ||||| ||||| || ||||||||||| Sbjct 202562 GTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGA- 202504 Query 25071 TCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 | || | ||| | || | ||| || || || || |||||||| ||||| || || ||| Sbjct 202503 TAACGTCAAGTCGAAGATTCA-AGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTA 202445 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | ||||| || || || | ||||| | ||| || | ||| ||||| ||||| || | Sbjct 202444 TCTTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGG 202385 Query 25189 AATCCACGCTACATTTAGTGCT 25210 | || || || || || || || Sbjct 202384 AGTCGACCCTTCACTTGGTCCT 202363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323114903875