Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq61 107 2e-18
seq112 98.7 9e-16
>seq61
Length=91600
Score = 107 bits (118), Expect = 2e-18
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || ||| ||||||| |||| || ||||| ||
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||| | || | ||| ||||| ||||| ||||||||||||
Sbjct 25851 GACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGCATTCCACCTGAC 25907
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | || || || ||||| ||| | ||||| | ||||| | ||| |||
Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|| || || || || || || || ||| | || || | || | ||||||
Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018
>seq112
Length=719005
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | || ||| | || || ||||| ||
Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| |||| | ||| || || || || |||||||| |||||
Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCA-GGATAAGGAGGGTATTCCACCAGACCA 202000
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || || ||||| || || || |||| || || || |||| |||||
Sbjct 201999 GCAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAA 201940
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| ||||| || ||| || || || |||
Sbjct 201939 CATCCAAAAGGAGAGCACACTGCACTTGGTG 201909
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/181 (72%), Gaps = 6/181 (3%)
Strand=Plus/Minus
Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCA 25089
||||||| | || || ||||| |||||||||||||| || || || | || | |||
Sbjct 202821 CCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGA--CAATGTCAAATCCAAGATTCA 202764
Query 25090 CTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAG 25149
||||| ||||| ||||| || || || || || | ||||| ||||| || || | |
Sbjct 202763 -AGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAGCAGCTCG 202705
Query 25150 AAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGC 25209
| || | |||||| | |||||||| || ||||| || ||||| || ||||| || |
Sbjct 202704 AGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCATTTGGTTC 202645
Query 25210 T 25210
|
Sbjct 202644 T 202644
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/202 (71%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| | ||||| || |||| || | ||||| ||||| || |||||||||||
Sbjct 202562 GTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGA- 202504
Query 25071 TCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
| || | ||| | || | ||| || || || || |||||||| ||||| || || |||
Sbjct 202503 TAACGTCAAGTCGAAGATTCA-AGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTA 202445
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| ||||| || || || | ||||| | ||| || | ||| ||||| ||||| || |
Sbjct 202444 TCTTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGG 202385
Query 25189 AATCCACGCTACATTTAGTGCT 25210
| || || || || || || ||
Sbjct 202384 AGTCGACCCTTCACTTGGTCCT 202363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433323114903875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |