Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq887 96.9 4e-15
>seq887
Length=503426
Score = 96.9 bits (106), Expect = 4e-15
Identities = 194/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||||||||| ||||| || || | || || |||| |||||||| ||||||
Sbjct 201897 ATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGG 201838
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
||||||||||| || | || || | || || |||||| | || | ||| || |
Sbjct 201837 AATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCGACCAAG 201778
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || || || ||||||||||| || || || || || | | || || || | |
Sbjct 201777 TTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATGAAGTAT 201718
Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||| ||||| || || || | ||| || || || || || || || | ||
Sbjct 201717 CGCTCGTCATCATTGAGTTTGTTGTTCCAGTCATGAAGGTCCTTGGACAGGTCAATCTCC 201658
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| | ||||| || ||||| || || || |||||||| | ||| ||
Sbjct 201657 TCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556854361297000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |