Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq887 96.9 4e-15 >seq887 Length=503426 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||||||||| ||||| || || | || || |||| |||||||| |||||| Sbjct 201897 ATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGG 201838 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||||||||| || | || || | || || |||||| | || | ||| || | Sbjct 201837 AATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCGACCAAG 201778 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || || || ||||||||||| || || || || || | | || || || | | Sbjct 201777 TTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATGAAGTAT 201718 Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||| ||||| || || || | ||| || || || || || || || | || Sbjct 201717 CGCTCGTCATCATTGAGTTTGTTGTTCCAGTCATGAAGGTCCTTGGACAGGTCAATCTCC 201658 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| || || || |||||||| | ||| || Sbjct 201657 TCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854361297000