Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq61 122 7e-23 seq112 120 3e-22 seq190 107 2e-18 >seq61 Length=91600 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || ||||| |||| || || || || | | Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || |||||||||||||| || |||||||| || || Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| || | || || ||||||| ||||||| |||||| Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || |||| |||| ||||| Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 26017 >seq112 Length=719005 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || | | || || | ||| || ||||| Sbjct 202831 ACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAATCC 202772 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || ||||| || ||||| |||||| | || || ||||| || Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| |||| ||||||||||| ||||| || ||||| | ||| Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | || || ||| Sbjct 202651 TTGGTTCTCCGCCTCCGTGGTGGT 202628 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||| || || || | | Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || |||||||| ||||||||||| ||||| || || Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | |||||| |||||| | || || |||||| Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||||| || | || |||| || ||| Sbjct 202166 ATCCAGAAGGAGTCCACACTCCATTTGGTCCTTCGTCTGCGTGGTGGT 202119 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||| ||||||||||||||||| || || ||||||||||| ||||| || || Sbjct 202490 AAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCTGGTAAG 202431 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || || ||| | ||||| ||||||||||| || || || ||| | || Sbjct 202430 CAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCGACCCTTCAC 202371 Query 22423 TTAGT 22427 || || Sbjct 202370 TTGGT 202366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || | || | || || || | || Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| ||||| || ||||||||||||||||| || || Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||||| |||||| ||| || | ||| |||||| Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAAC 201939 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||| | || || || ||||| | || || ||| Sbjct 201938 ATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCGTCTTCGTGGTGGT 201891 >seq190 Length=335796 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | ||||| | ||| || |||| Sbjct 147788 ACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATCGACAATGTCAAGTCC 147729 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| || ||||| || || |||||| | || || |||||||| Sbjct 147728 AAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTGATCTTCGCCGGCAAG 147669 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | |||||| ||||| |||||||||||||||| || || Sbjct 147668 CAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAA 147625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723268222625