Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq61 197 3e-45
seq112 167 4e-36
seq190 138 2e-27
>seq61
Length=91600
Score = 197 bits (218), Expect = 3e-45
Identities = 183/232 (79%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|||||| || || |||| || | || || || ||||| || |||||||| || |||||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || ||||| | ||||| || ||||| || || | ||| ||||| |||||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|||||||||||||||||||||||| | |||||| ||||||||||| | || || ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | |||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGATG 25787
>seq112
Length=719005
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || |||||||| || |||||||| || || ||
Sbjct 202120 CCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAT 202179
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||| || | ||||| |||||||| ||||||| || ||||| |||||
Sbjct 202180 AAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 202239
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||| || |||||||| || | ||| || ||
Sbjct 202240 ATACCCTCCTTATCTTGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACC 202299
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| |||||||| || || || |||||||||||||| ||||||||
Sbjct 202300 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
Score = 158 bits (174), Expect = 2e-33
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || || ||||| || |||||
Sbjct 202348 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 202407
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || || || || || | ||| ||||| ||||||
Sbjct 202408 AGGGTACGACCGTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGA 202467
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||||||| ||||| ||||| | || ||||||
Sbjct 202468 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACT 202527
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| || || ||||| ||||| || |||||||| ||||
Sbjct 202528 TCTAACGTAATGGTCTTTCCGGTAAGGGTCTTAACGA 202564
Score = 149 bits (164), Expect = 1e-30
Identities = 156/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | ||||| || || |||||||| ||||||||||| ||||| |||
Sbjct 202629 CCACCACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAG 202688
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | ||| || || || |||
Sbjct 202689 AGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGA 202748
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||||||||||||||| | ||||| ||||| ||||| | || |||||
Sbjct 202749 ATGCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACC 202808
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| || || ||||
Sbjct 202809 TCAAGAGTGATGGTCTTCCCAGTGA 202833
Score = 145 bits (160), Expect = 1e-29
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| | || || ||||| ||||| |||||||| || ||| ||| ||||||||||| |
Sbjct 201884 TTTACTGACCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGT 201943
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| ||| | || | ||||| || |||||||| || ||||| || | || || ||||
Sbjct 201944 AGTCGCTCAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGT 202003
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| |||||||| || ||||| || |||||||||| ||| || || || ||||| | ||
Sbjct 202004 CTGGTGGAATACCCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATG 202063
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || || || || || || ||||| || | ||||| || || ||||||||
Sbjct 202064 ACTCAACCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
>seq190
Length=335796
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| ||||||||||| || | ||||| || | ||||| |||||||| ||
Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | ||| ||||| ||||| || || ||||||||||||||||| | |||||| |||
Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || | || || || || | |||||||| || ||||| ||||||||||||||
Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 147803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921611743741000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |