Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq411 172 1e-37
seq887 158 2e-33
>seq411
Length=256942
Score = 172 bits (190), Expect = 1e-37
Identities = 454/683 (66%), Gaps = 14/683 (2%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| ||| ||| || ||||| || | || ||||| ||||||||| ||||| |||
Sbjct 122033 GCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAGG 122092
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| || ||||| || || | || || ||| ||| |||||| || ||||||
Sbjct 122093 TTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 122152
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|||||||||||||| || |||||| ||||| |||| | | || ||| || | |
Sbjct 122153 TAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTC 122212
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927
||||||| ||| ||||| |||||||||| ||||| || ||| || ||||||
Sbjct 122213 TGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCG 122272
Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987
|| || || |||| || | || || |||||| |||||||| || ||||
Sbjct 122273 AATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCAT 122332
Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047
||| | | || | || |||||| || || ||||||||||| || | ||||||
Sbjct 122333 GTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGA 122392
Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106
|| | | | || ||| ||| ||| || || | || || | | || || ||
Sbjct 122393 TCACGAGCGCGAACTTCTTCCTTGCC-GTGATTTTTTCGGAGATCAAGGTACTCGAAAAC 122451
Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166
|| ||||||| ||||| | ||||| |||| || || || |||||||| || |||||
Sbjct 122452 ATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTG 122511
Query 245167 GTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224
|| || ||| ||| | || | |||||| | | || |||| || || ||||| |||
Sbjct 122512 GT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAG 122569
Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT---- 245280
| |||||| ||||| ||||| || || || | | | | ||| |||||||
Sbjct 122570 TTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC---GAATTCTG-TGGACATTGAG 122625
Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340
|| | || || || | ||| ||||| | ||| || |||||| ||||| || ||
Sbjct 122626 ACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACC 122685
Query 245341 CTCCATGCTGTCCGACTTCATGT 245363
|| || || || ||||||||
Sbjct 122686 ATCAATACTATCATCCTTCATGT 122708
>seq887
Length=503426
Score = 158 bits (174), Expect = 2e-33
Identities = 356/519 (69%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691
|||||||| ||||||||||| |||||||| | |||||| | || | | | | ||
Sbjct 201995 CCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCA-AGACAAGTCATCCAC 202053
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | || | |||| || || ||||||| ||||| ||||||||| || | ||
Sbjct 202054 ATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATT 202113
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
|||||| ||||||||| | ||| || || || ||| ||||||| |||||||| ||||
Sbjct 202114 CGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCCGGACTTACCTTCTCCAACG 202172
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| | || | |||||||| || || | |||||||| |||||||| ||||| |
Sbjct 202173 AGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTC---TC 202229
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|| | | ||| |||| | ||| | || | | ||||||| ||||| || ||
Sbjct 202230 ACTTGAAGCA-TCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAA 202288
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988
|||||| ||||||| | || || | || || ||| | || ||||||||||| | |
Sbjct 202289 ATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACTCCAA 202347
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCT 43045
||| ||| |||| ||||| ||| || || || | ||| || |||| | ||
Sbjct 202348 CCTGATGAAGCAA-TACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCC--CTTGGCAA 202404
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
| | ||||||| | | ||| |||||||| |||||||||||||| | | ||
Sbjct 202405 CGACAAAGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 202464
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
|||||| ||||| || |||||||| || | || |||||
Sbjct 202465 CAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTACCA 202503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944328281078000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |