Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq411 172 1e-37 seq887 158 2e-33 >seq411 Length=256942 Score = 172 bits (190), Expect = 1e-37 Identities = 454/683 (66%), Gaps = 14/683 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||| ||| || ||||| || | || ||||| ||||||||| ||||| ||| Sbjct 122033 GCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAGG 122092 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||||| || || | || || ||| ||| |||||| || |||||| Sbjct 122093 TTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 122152 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||||||||| || |||||| ||||| |||| | | || ||| || | | Sbjct 122153 TAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTC 122212 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| ||||| |||||||||| ||||| || ||| || |||||| Sbjct 122213 TGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCG 122272 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || || |||| || | || || |||||| |||||||| || |||| Sbjct 122273 AATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCAT 122332 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 ||| | | || | || |||||| || || ||||||||||| || | |||||| Sbjct 122333 GTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGA 122392 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | | | || ||| ||| ||| || || | || || | | || || || Sbjct 122393 TCACGAGCGCGAACTTCTTCCTTGCC-GTGATTTTTTCGGAGATCAAGGTACTCGAAAAC 122451 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || ||||||| ||||| | ||||| |||| || || || |||||||| || ||||| Sbjct 122452 ATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTG 122511 Query 245167 GTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 || || ||| ||| | || | |||||| | | || |||| || || ||||| ||| Sbjct 122512 GT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAG 122569 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT---- 245280 | |||||| ||||| ||||| || || || | | | | ||| ||||||| Sbjct 122570 TTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC---GAATTCTG-TGGACATTGAG 122625 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | || || || | ||| ||||| | ||| || |||||| ||||| || || Sbjct 122626 ACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACC 122685 Query 245341 CTCCATGCTGTCCGACTTCATGT 245363 || || || || |||||||| Sbjct 122686 ATCAATACTATCATCCTTCATGT 122708 >seq887 Length=503426 Score = 158 bits (174), Expect = 2e-33 Identities = 356/519 (69%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691 |||||||| ||||||||||| |||||||| | |||||| | || | | | | || Sbjct 201995 CCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCA-AGACAAGTCATCCAC 202053 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | || | |||| || || ||||||| ||||| ||||||||| || | || Sbjct 202054 ATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATT 202113 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||| ||||||||| | ||| || || || ||| ||||||| |||||||| |||| Sbjct 202114 CGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCCGGACTTACCTTCTCCAACG 202172 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | | || | |||||||| || || | |||||||| |||||||| ||||| | Sbjct 202173 AGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTC---TC 202229 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 || | | ||| |||| | ||| | || | | ||||||| ||||| || || Sbjct 202230 ACTTGAAGCA-TCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAA 202288 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988 |||||| ||||||| | || || | || || ||| | || ||||||||||| | | Sbjct 202289 ATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACTCCAA 202347 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCT 43045 ||| ||| |||| ||||| ||| || || || | ||| || |||| | || Sbjct 202348 CCTGATGAAGCAA-TACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCC--CTTGGCAA 202404 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | | ||||||| | | ||| |||||||| |||||||||||||| | | || Sbjct 202405 CGACAAAGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 202464 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||| ||||| || |||||||| || | || ||||| Sbjct 202465 CAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTACCA 202503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328281078000