Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq411 233 2e-56 seq887 111 2e-19 >seq411 Length=256942 Score = 233 bits (258), Expect = 2e-56 Identities = 1084/1688 (64%), Gaps = 53/1688 (3%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || ||| ||| |||||| ||||||||||| |||||||| | Sbjct 121119 TGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGC 121178 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || |||||| | | |||||| || | |||| | ||| ||| | |||| Sbjct 121179 CCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGT 121238 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTCCACGATCCGCCGCCATATCAATC 113743 || |||||| ||| |||||||| ||| |||| |||||||| || ||||| | | Sbjct 121239 GGATGTTCATTGATTGAGATTGATCAATGTAAGCA-CCACGATCGGCAGCCATCTGGACG 121297 Query 113744 ACATCCTTCATCTT---GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 113800 | | | | || ||||||||| || || ||||||| ||| || ||| |||| Sbjct 121298 A--TGGTACG-CTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGA 121354 Query 113801 ATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 113860 || | | |||||| || || ||||| | || || || |||||| | | | Sbjct 121355 ATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCT 121414 Query 113861 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACT 113918 ||||| || || || | ||||||| || | ||| | |||| || |||| Sbjct 121415 GACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGT--TGACGACTTGGAACT 121472 Query 113919 CACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 113977 | || ||||| || | ||| ||||| |||| ||||||||||| ||||| || ||| Sbjct 121473 CTCCAGCGAGCACACGACG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTG 121531 Query 113978 TTACCCAAGATTTGGGC-GGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 |||||||| || | | ||| ||| |||||||| || || | || | ||||| || Sbjct 121532 A-ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCG 121590 Query 114037 GAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC--TTTGTC 114094 || ||| | || | | || ||| ||| || | ||||| || || || | || | Sbjct 121591 GATACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGGAG 121649 Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154 | | | ||||||||| | || || ||| | ||| |||| |||||||| ||||| Sbjct 121650 TGACACC-CCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAGATCCCTCGTATGTC 121708 Query 114155 TCGTATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 114211 |||||||| || || || | || | || | || | || ||||| || Sbjct 121709 TCGTATGGTCC---AAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAG 121765 Query 114212 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 114271 || |||||||| || | || | ||||||||| || || || | || || Sbjct 121766 ATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACG- 121824 Query 114272 CACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 114330 || | | || ||||| || |||||||| ||||| || |||| || | || | | Sbjct 121825 CAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAA 121884 Query 114331 ATTAGACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 114389 || || || || ||| | | || || | || ||||| | | | || || | Sbjct 121885 GTTGGATTTCTTTGCT-TCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGT 121943 Query 114390 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 114449 | ||| ||||||| || || || ||||| | | | ||| | | | || | || Sbjct 121944 TCTTGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TGTT 122001 Query 114450 CATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 114507 ||| || || | ||||| || || || |||| ||||| || | |||||| Sbjct 122002 CATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGG 122061 Query 114508 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 114567 | | |||||| | ||| || || |||| || || || |||||| || | ||||| Sbjct 122062 TGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTT 122121 Query 114568 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 114627 || || |||| ||| || ||||||||||| |||||| | || | || ||||| || Sbjct 122122 CTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGT 122181 Query 114628 TTGGGACTTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGC- 114685 ||||| | |||||| | | ||| | | | | | || | ||| ||| | | Sbjct 122182 TTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGA----TGGTCTTGCGACCCT 122237 Query 114686 --CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 114743 ||||| |||| ||||| ||| || || || || || ||||| | | |||| | Sbjct 122238 TGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAA 122297 Query 114744 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCA 114803 | ||||| || | ||||| | || | |||| ||| || ||||||||||||| Sbjct 122298 GACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCA 122357 Query 114804 TGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 114863 |||| || ||||||||||||||||| |||||||||| ||| |||| ||||||| | | Sbjct 122358 TGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGC 122417 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | ||||| || | || | | || | | ||| |||||||| || || ||||| | Sbjct 122418 CGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGA 122477 Query 114924 CCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCAT 114977 |||| || || | | || ||| |||||| ||||| || || ||| | Sbjct 122478 TGGCGAATGCACC---AGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGT 122534 Query 114978 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 115037 | || || | ||||| |||| |||||| | || | ||| ||||| || ||| || Sbjct 122535 TGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAG 122594 Query 115038 ACTTATTGGCTCTGACATC-ATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 115096 |||||| || || |||| | | ||| ||||| || || ||| ||||| Sbjct 122595 CTCCGGTGGCTC-GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATC 122653 Query 115097 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATA 115156 || || | |||| || ||||||| || || || ||| |||| | | || Sbjct 122654 ATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATT 122713 Query 115157 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 115216 | |||||| || | ||||| | |||||| || || |||||| ||||| | ||| Sbjct 122714 AAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCG 122773 Query 115217 TGGATGAA 115224 || |||| Sbjct 122774 TGTGTGAA 122781 >seq887 Length=503426 Score = 111 bits (122), Expect = 2e-19 Identities = 297/449 (66%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| |||||||| |||||||||||||| ||| | | ||| |||||||| Sbjct 202501 GTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCAT 202442 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 || || |||||||| || || | | | ||| | |||| ||| |||| Sbjct 202441 GAAGTCGAATGGGTTGGCAGATTTGTAGACT-TTGTCGTTGCCAAGGGCAAGGAGAAGAC 202383 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | || |||||||||| | |||| | |||||||| |||| || || Sbjct 202382 GATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCAC 202323 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || || || || | ||| ||| ||| ||||| || || || | || | | Sbjct 202322 AAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTT 202263 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCT 126055 ||| | | | | || | || || |||| |||||| ||||| || Sbjct 202262 GAACTGCTTGCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCA 202204 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 ||| |||||||||||||| || || | || || |||||| ||||| | |||||| Sbjct 202203 GTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGG 202144 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || ||||||||||||||||| || | |||||||| ||||||||| ||||| || Sbjct 202143 CCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACG 202084 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| |||| | |||| |||||| Sbjct 202083 GCGGCGAATGCAACCAAGCGCTGAGCAAA 202055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346693099000