Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq112 113 5e-20 seq61 102 9e-17 >seq112 Length=719005 Score = 113 bits (124), Expect = 5e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| |||| || | | |||||||||||| |||| ||||||||||||||| || |||| Sbjct 201884 TTTACTGACCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGT 201943 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | || || || || | || || | |||||| |||||||| || | ||||||||||| Sbjct 201944 AGTCGCTCAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGT 202003 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTC 42152 | | ||| | | |||||| ||| ||| | |||| || | | | | |||||| Sbjct 202004 CTGGTGGAATACCCTCCTTATCC-TGAATCTTTGACTTAACATTATCAATTGTGTCGGAT 202062 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | || || || || || || | ||||| |||||||| ||||| Sbjct 202063 GACTCAACCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | |||| |||||| || || ||||| |||| | || ||| | || || Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || ||||| ||||||||||||||||| | ||| | | |||||| | | || Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTAT-CTTG 202256 Query 42120 ATTTTTTG---TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 | | || | || | |||| | || || || || || || | |||||||| Sbjct 202257 AATCTTCGACTTTACATTGTCG--ATGGTATCAGATGACTCAACCTCCAGAGTGATGGTC 202314 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| || ||||| ||||| Sbjct 202315 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 >seq61 Length=91600 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || || ||||| |||||||| Sbjct 25982 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAA 25923 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || || || |||||||| | ||| | || |||||||| ||| | || | |||| Sbjct 25922 GATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCT-TGAATCTTGGACTTGACAT 25864 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| ||||||||||||||||| || ||||| | Sbjct 25863 TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGA 25804 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 25803 CAAAGATCTGCAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206519102000