Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq112 123 2e-23 >seq112 Length=719005 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | ||| | || || || || || |||||||| || | Sbjct 202119 ACCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 202178 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||||| | || ||||| ||||||||||| ||||||| ||||||||||| || || Sbjct 202179 TAAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGG 202238 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||||||| || | |||||| | || || Sbjct 202239 GATACCCTCCTTATCTTGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAAC 202298 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| |||| || || ||||| || ||||| Sbjct 202299 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || ||||| ||||||||||| | || |||||| |||| Sbjct 202644 AGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCC 202703 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| |||| | || ||||| || |||||||| ||||| || ||| Sbjct 202704 TCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 202763 Query 64352 TGTATTTT 64359 || || || Sbjct 202764 TGAATCTT 202771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || ||||||||||| || | | ||| || ||||||| |||||| Sbjct 202372 TGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGCTGC 202431 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || || |||||||| || ||||| || || || ||||| || || Sbjct 202432 TTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCTTGAATCTTC 202491 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | || ||||||| || | |||||| ||||| Sbjct 202492 GACTTGACGTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAATGGTCTTTCCGGTA 202551 Query 64421 AAAGTTTTTACGA 64433 | || || |||| Sbjct 202552 AGGGTCTTAACGA 202564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639022857000