Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq411 158 1e-33
>seq411
Length=256942
Score = 158 bits (174), Expect = 1e-33
Identities = 435/668 (65%), Gaps = 18/668 (3%)
Strand=Plus/Minus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| || | ||||| |||||| ||||| | ||||| || | || || || |||||
Sbjct 122685 GGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAATGCTGGTGGTATCGGT 122626
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
||| ||||||| | || |||| || | ||||| || || || |||| ||||
Sbjct 122625 CTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCTGGCACAAACGGCAACTCC 122566
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
||||| |||| ||||||||| | || ||||||||| | || | || || |||||||||
Sbjct 122565 AACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATGTTGACCAGGGT 122506
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218
|| | | | ||| | ||||| |||| |||||||| |||||||| || ||
Sbjct 122505 GGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCAGATGTTTTC 122446
Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278
| | | | || || ||||| || |||||||| || | | || | || ||||||
Sbjct 122445 GAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTCGCGCTCGTGATCTCTTC 122386
Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338
|||||||||||| | ||||| || || ||||| || || || || || | | ||||
Sbjct 122385 TACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAAAGAATGGCACATGGACA 122326
Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGAC 94398
|| | || ||||| || || || || || | || || | ||| ||| ||
Sbjct 122325 CTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATGG---------TGATGAA 122275
Query 94399 TTGTATGCTCGTTACGA-----AT----CGCAGGGCAAGGCCAGGAAGGTTATGGATGCT 94449
|| | |||| ||||| || | ||||||||| | ||| || | ||
Sbjct 122274 TTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAAGACCATCAAGGCA 122215
Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509
||| || ||| | || | || | || ||||| || | |||| ||| |
Sbjct 122214 CAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAAACCCCTTCATGCTC 122155
Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569
| |||||| || |||| ||| ||||||| || | ||||| || |||||
Sbjct 122154 TACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGTACCATTCGAAGCTCC 122095
Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629
|| |||||||| |||||||||||||| | | || || ||| | ||| |||||| ||
Sbjct 122094 AACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGTCGCTTGCTGTAACTTG 122035
Query 94630 GGCTCCAT 94637
| |||||
Sbjct 122034 GCATCCAT 122027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494717479763000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |