Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq411 158 1e-33 >seq411 Length=256942 Score = 158 bits (174), Expect = 1e-33 Identities = 435/668 (65%), Gaps = 18/668 (3%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| |||||| ||||| | ||||| || | || || || ||||| Sbjct 122685 GGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAATGCTGGTGGTATCGGT 122626 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 ||| ||||||| | || |||| || | ||||| || || || |||| |||| Sbjct 122625 CTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCTGGCACAAACGGCAACTCC 122566 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 ||||| |||| ||||||||| | || ||||||||| | || | || || ||||||||| Sbjct 122565 AACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATGTTGACCAGGGT 122506 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | | | ||| | ||||| |||| |||||||| |||||||| || || Sbjct 122505 GGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCAGATGTTTTC 122446 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | | | | || || ||||| || |||||||| || | | || | || |||||| Sbjct 122445 GAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTCGCGCTCGTGATCTCTTC 122386 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 |||||||||||| | ||||| || || ||||| || || || || || | | |||| Sbjct 122385 TACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAAAGAATGGCACATGGACA 122326 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGAC 94398 || | || ||||| || || || || || | || || | ||| ||| || Sbjct 122325 CTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATGG---------TGATGAA 122275 Query 94399 TTGTATGCTCGTTACGA-----AT----CGCAGGGCAAGGCCAGGAAGGTTATGGATGCT 94449 || | |||| ||||| || | ||||||||| | ||| || | || Sbjct 122274 TTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAAGACCATCAAGGCA 122215 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 ||| || ||| | || | || | || ||||| || | |||| ||| | Sbjct 122214 CAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAAACCCCTTCATGCTC 122155 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | |||||| || |||| ||| ||||||| || | ||||| || ||||| Sbjct 122154 TACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGTACCATTCGAAGCTCC 122095 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| |||||||||||||| | | || || ||| | ||| |||||| || Sbjct 122094 AACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGTCGCTTGCTGTAACTTG 122035 Query 94630 GGCTCCAT 94637 | ||||| Sbjct 122034 GCATCCAT 122027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717479763000