Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq61 107 2e-18
seq112 102 8e-17
>seq61
Length=91600
Score = 107 bits (118), Expect = 2e-18
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || | ||| | |||||||||| || ||||||||||||
Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || ||||| || || | |||||||||| || ||||| || ||
Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || |||| || | |||||| | ||||| |
Sbjct 25897 ATGCCTTCCTTGTC-TTGAATCTTGGACTTGACATTG-TCGATGGTGTCCGAAGACTCAA 25840
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||||| || | ||||| || || || || || ||||| |||||||||
Sbjct 25839 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 25790
>seq112
Length=719005
Score = 102 bits (112), Expect = 8e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGCT 138446
|| || || | |||||| || || || | || || ||||||||| ||||||||||||||
Sbjct 201892 CCACCACGAAGACGCAACACCAAGTGCA-GTGTGCTCTCCTTTTGGATGTTGTAGTCGCT 201950
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||||| ||||| | || || || | |||| | ||||| ||||| || ||
Sbjct 201951 CAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGG 202010
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || ||| | |||| |||| | || | ||||||| ||||| |
Sbjct 202011 AATACCCTCCTTATC-CTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAA 202069
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| ||| || ||||| ||||||||
Sbjct 202070 CCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || ||||| | | |||||||| || |||||||||||
Sbjct 202120 CCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAT 202179
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || ||| ||||| ||||| || |||| | || || ||||| ||||| || ||
Sbjct 202180 AAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 202239
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || ||| | || | ||| |||| || | ||| || | ||||| |
Sbjct 202240 ATACCCTCCTTATC-TTGAATCTTCGACTTTACATTG-TCGATGGTATCAGATGACTCAA 202297
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || |||||||| || || || || ||||||||
Sbjct 202298 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496256661966000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |