Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq61 118 1e-21
seq112 98.7 9e-16
>seq61
Length=91600
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
|||||| || || | || || ||||| || ||||| ||||| ||||| || || |||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| ||| || || | ||| || || ||| | || | ||||||||||| || ||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
||||||||| || |||||||| || |||| || | |||||| |||||||| ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | |||||||| || || || || ||||| || |||||
Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791
>seq112
Length=719005
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | |||||| | ||||| || ||||||||||| || || |||||
Sbjct 201892 CCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 201951
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| ||||| || || || ||| | |||||||| |||||||| || |||
Sbjct 201952 AACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGA 202011
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || ||||| ||||| ||| || | || | |||||||| ||||| ||
Sbjct 202012 ATACCCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACC 202071
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | |||| || || || || | ||| || ||||| || |||||
Sbjct 202072 TCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || | ||| || || || ||||||||||| || |||||
Sbjct 202626 ATACCACCACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCA 202685
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| | || || | || ||||| ||| | ||||| |||||||| |||||
Sbjct 202686 GAGAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGA 202745
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||||||||| || |||||||| || ||||| || | ||||| ||||||||
Sbjct 202746 GGAATGCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCT 202805
Query 45291 ACTTCGAGAGT 45301
|| || |||||
Sbjct 202806 ACCTCAAGAGT 202816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451997973713000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |