Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq411 226 3e-54
seq887 105 8e-18
>seq411
Length=256942
Score = 226 bits (250), Expect = 3e-54
Identities = 1086/1691 (64%), Gaps = 59/1691 (3%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| |||||| || ||| ||| |||||| ||||||||||| |||||||| |
Sbjct 121119 TGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGC 121178
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| |||||| | | |||||| || | |||| | ||| ||| | ||||
Sbjct 121179 CCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGT 121238
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTCCCCGATCCGCCGCCATATCAATC 115704
|| |||||| ||| |||||||| ||| |||| || ||||| || ||||| | |
Sbjct 121239 GGATGTTCATTGATTGAGATTGATCAATGTAAGCA-CCACGATCGGCAGCCATCTGGACG 121297
Query 115705 ACATCCTTCATCTT---GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761
| | | | || ||||||||| || || ||||||| ||| || ||| ||||
Sbjct 121298 A--TGGTACG-CTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGA 121354
Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821
|| | | |||||| || || ||||| | || || || |||||| | | |
Sbjct 121355 ATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCT 121414
Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877
||||| || || || | ||||||| || | | | | ||||| || ||
Sbjct 121415 GACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGG----TTGACGACTTGGAA 121470
Query 115878 CTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCAT 115936
||| || ||||| || | ||| |||||||||| ||||||||||| ||||| || |
Sbjct 121471 CTCTCCAGCGAGCACACGACG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGT 121529
Query 115937 TGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
|| |||||||| || | ||| | ||| |||||||| || || | || | ||||||
Sbjct 121530 TGA-ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTG 121588
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC--TTTG 116053
|||| ||| | | || ||| ||| || | ||||| || || || | || |
Sbjct 121589 CGGATACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGG 121647
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
| | | |||||||||| | || || ||| | || |||| |||||||| |||
Sbjct 121648 AGTGACAC-CCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAGATCCCTCGTATG 121706
Query 116114 TCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 116170
|||| ||||| || || || | || | || | || | || ||||| |
Sbjct 121707 TCTCGTATGGTCC---AAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGT 121763
Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGAC 116230
| || |||||||| || | || | ||||||||| || || || | ||||
Sbjct 121764 AGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGAC 121823
Query 116231 GGCACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289
| || | | || ||||| || |||||||| ||||| || |||| || | || |
Sbjct 121824 G-CAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGG 121882
Query 116290 ATATTAGACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
| || || || || ||| | | || || | || ||||| | | | || ||
Sbjct 121883 AAGTTGGATTTCTTTGCT-TCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAG 121941
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408
|| ||| ||||||| || || || ||||| | | | ||| | | | || |
Sbjct 121942 GTTCTTGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TG 121999
Query 116409 TTCATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466
||||| || || | ||||| || || || |||| ||||| || | ||||||
Sbjct 122000 TTCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCT 122059
Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526
| | |||||| | ||| || || |||| || || || |||||| || | |||
Sbjct 122060 GGTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTC 122119
Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586
|| || || |||| ||| || ||||||||||||||||| | || | || |||||
Sbjct 122120 TTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCG 122179
Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCG 116645
||||||| | |||||| | | ||| | | | | | || | ||| ||| |
Sbjct 122180 GTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGA----TGGTCTTGCGACC 122235
Query 116646 C---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTG 116701
| ||||| |||| ||||| ||| || ||||| || || ||||| | || | ||||
Sbjct 122236 CTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACC-ATAGACATCTG 122294
Query 116702 AGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCT 116761
|| ||||| || | || || | || | |||| ||| || ||||| ||||
Sbjct 122295 CAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCT 122354
Query 116762 TCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCAT 116821
||||||| || |||||||||||||| || |||||||||| ||| |||| ||||||| |
Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414
Query 116822 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 116881
|| ||||| || | || | | || | | ||| |||||||| || || ||||
Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474
Query 116882 ACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTG 116935
| | |||| || || | |||| ||| |||||| ||||| || || ||
Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTG---TTTCCACCCTGGTCAACATATCTGGCAGTGT 122531
Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995
||| || || | ||||| |||| |||||| | || | ||| ||||| || |||
Sbjct 122532 TGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGT 122591
Query 116996 GAGACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054
|| | |||||| || || ||||| | | ||| ||||| || || ||| |||
Sbjct 122592 AAGCTCCGGTGGCTC-GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAG 122650
Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114
|| || || | |||| || ||||||| ||||| || ||| |||| | |
Sbjct 122651 ATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCA 122710
Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174
|| | |||||| || | ||||| | |||||| || || |||||| ||||| |
Sbjct 122711 ATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAA 122770
Query 117175 GCGTGGATGAA 117185
||||| ||||
Sbjct 122771 GCGTGTGTGAA 122781
>seq887
Length=503426
Score = 105 bits (116), Expect = 8e-18
Identities = 296/449 (66%), Gaps = 4/449 (1%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| || || || |||||||| |||||||||||||| || | || ||| ||||||||
Sbjct 202501 GTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCAT 202442
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349
|| || |||||||| || || | | | ||| | |||| ||| ||||
Sbjct 202441 GAAGTCGAATGGGTTGGCAGATTTGTAGACT-TTGTCGTTGCCAAGGGCAAGGAGAAGAC 202383
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
|||| | || |||||||||| | |||| | |||||||| |||| || ||
Sbjct 202382 GATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCAC 202323
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
| || || || || | ||| ||| ||| || || ||||| || | || | |
Sbjct 202322 AAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTT 202263
Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCT 127528
||| | | | | || | || || | |||| |||||| |||||| ||
Sbjct 202262 GAACTGCTTGCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCA 202204
Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588
||| |||||||||||||| || || | || || |||||| || || | ||||||
Sbjct 202203 GTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGG 202144
Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
|| ||||||||||||||||| || | ||||| ||| ||||||||| ||||| ||
Sbjct 202143 CCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACG 202084
Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAA 127677
||||| |||| | |||| |||||
Sbjct 202083 GCGGCGAATGCAACCAAGCGCTGAGCAAA 202055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500106323000
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