Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq411 226 3e-54 seq887 105 8e-18 >seq411 Length=256942 Score = 226 bits (250), Expect = 3e-54 Identities = 1086/1691 (64%), Gaps = 59/1691 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || ||| ||| |||||| ||||||||||| |||||||| | Sbjct 121119 TGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGC 121178 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || |||||| | | |||||| || | |||| | ||| ||| | |||| Sbjct 121179 CCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGT 121238 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || |||||| ||| |||||||| ||| |||| || ||||| || ||||| | | Sbjct 121239 GGATGTTCATTGATTGAGATTGATCAATGTAAGCA-CCACGATCGGCAGCCATCTGGACG 121297 Query 115705 ACATCCTTCATCTT---GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 | | | | || ||||||||| || || ||||||| ||| || ||| |||| Sbjct 121298 A--TGGTACG-CTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGA 121354 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 || | | |||||| || || ||||| | || || || |||||| | | | Sbjct 121355 ATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCT 121414 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| || || || | ||||||| || | | | | ||||| || || Sbjct 121415 GACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGG----TTGACGACTTGGAA 121470 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCAT 115936 ||| || ||||| || | ||| |||||||||| ||||||||||| ||||| || | Sbjct 121471 CTCTCCAGCGAGCACACGACG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGT 121529 Query 115937 TGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || |||||||| || | ||| | ||| |||||||| || || | || | |||||| Sbjct 121530 TGA-ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTG 121588 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC--TTTG 116053 |||| ||| | | || ||| ||| || | ||||| || || || | || | Sbjct 121589 CGGATACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGG 121647 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | |||||||||| | || || ||| | || |||| |||||||| ||| Sbjct 121648 AGTGACAC-CCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAGATCCCTCGTATG 121706 Query 116114 TCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 116170 |||| ||||| || || || | || | || | || | || ||||| | Sbjct 121707 TCTCGTATGGTCC---AAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGT 121763 Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGAC 116230 | || |||||||| || | || | ||||||||| || || || | |||| Sbjct 121764 AGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGAC 121823 Query 116231 GGCACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 | || | | || ||||| || |||||||| ||||| || |||| || | || | Sbjct 121824 G-CAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGG 121882 Query 116290 ATATTAGACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 | || || || || ||| | | || || | || ||||| | | | || || Sbjct 121883 AAGTTGGATTTCTTTGCT-TCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAG 121941 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || ||| ||||||| || || || ||||| | | | ||| | | | || | Sbjct 121942 GTTCTTGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TG 121999 Query 116409 TTCATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 ||||| || || | ||||| || || || |||| ||||| || | |||||| Sbjct 122000 TTCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCT 122059 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | | |||||| | ||| || || |||| || || || |||||| || | ||| Sbjct 122060 GGTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTC 122119 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 || || || |||| ||| || ||||||||||||||||| | || | || ||||| Sbjct 122120 TTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCG 122179 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCG 116645 ||||||| | |||||| | | ||| | | | | | || | ||| ||| | Sbjct 122180 GTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGA----TGGTCTTGCGACC 122235 Query 116646 C---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTG 116701 | ||||| |||| ||||| ||| || ||||| || || ||||| | || | |||| Sbjct 122236 CTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACC-ATAGACATCTG 122294 Query 116702 AGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCT 116761 || ||||| || | || || | || | |||| ||| || ||||| |||| Sbjct 122295 CAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCT 122354 Query 116762 TCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCAT 116821 ||||||| || |||||||||||||| || |||||||||| ||| |||| ||||||| | Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414 Query 116822 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 116881 || ||||| || | || | | || | | ||| |||||||| || || |||| Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474 Query 116882 ACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 | | |||| || || | |||| ||| |||||| ||||| || || || Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTG---TTTCCACCCTGGTCAACATATCTGGCAGTGT 122531 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995 ||| || || | ||||| |||| |||||| | || | ||| ||||| || ||| Sbjct 122532 TGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGT 122591 Query 116996 GAGACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 || | |||||| || || ||||| | | ||| ||||| || || ||| ||| Sbjct 122592 AAGCTCCGGTGGCTC-GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAG 122650 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | |||| || ||||||| ||||| || ||| |||| | | Sbjct 122651 ATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCA 122710 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 || | |||||| || | ||||| | |||||| || || |||||| ||||| | Sbjct 122711 ATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAA 122770 Query 117175 GCGTGGATGAA 117185 ||||| |||| Sbjct 122771 GCGTGTGTGAA 122781 >seq887 Length=503426 Score = 105 bits (116), Expect = 8e-18 Identities = 296/449 (66%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || |||||||| |||||||||||||| || | || ||| |||||||| Sbjct 202501 GTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCAT 202442 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 || || |||||||| || || | | | ||| | |||| ||| |||| Sbjct 202441 GAAGTCGAATGGGTTGGCAGATTTGTAGACT-TTGTCGTTGCCAAGGGCAAGGAGAAGAC 202383 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | || |||||||||| | |||| | |||||||| |||| || || Sbjct 202382 GATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCAC 202323 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || || || || | ||| ||| ||| || || ||||| || | || | | Sbjct 202322 AAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTT 202263 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCT 127528 ||| | | | | || | || || | |||| |||||| |||||| || Sbjct 202262 GAACTGCTTGCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCA 202204 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||| |||||||||||||| || || | || || |||||| || || | |||||| Sbjct 202203 GTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGG 202144 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || ||||||||||||||||| || | ||||| ||| ||||||||| ||||| || Sbjct 202143 CCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACG 202084 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| |||| | |||| ||||| Sbjct 202083 GCGGCGAATGCAACCAAGCGCTGAGCAAA 202055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500106323000