Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq112 111 4e-19 seq190 87.8 4e-12 >seq112 Length=719005 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || |||||||| |||| ||||||||||| || || | ||||| Sbjct 202135 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCC 202194 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| ||||| ||||||||||| || || || || || Sbjct 202195 TCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCT 202254 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | || || || |||| ||||| ||| Sbjct 202255 TGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTC 202314 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 202315 TTGCCAGTCAGGGTCTTGACGAAGATCTG 202343 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || ||||||||||| ||||||||| ||| || Sbjct 201898 CGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTA 201957 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || |||||||| | ||||||||||| || ||| || Sbjct 201958 CGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCC 202017 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| || || | ||||| | || || || || || Sbjct 202018 TCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAAT 202077 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| |||||||| || || Sbjct 202078 GTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTG 202115 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| || | ||||||||| | | || | || ||| Sbjct 202363 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCT 202422 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||| |||||||| || ||| || || || Sbjct 202423 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCT 202482 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||||| | | ||||| || ||||| || ||| Sbjct 202483 TGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAATGGTC 202542 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || || || || || || Sbjct 202543 TTTCCGGTAAGGGTCTTAAC 202562 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| |||||| |||| | || | || || || |||||| Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||| || | ||| ||||| |||||| ||| ||||| || |||||||| Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || |||| ||||| | | ||||| || | ||||| ||||| || ||| Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGTG 202832 Query 199607 A 199607 | Sbjct 202833 A 202833 >seq190 Length=335796 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| |||||| || | | ||| | |||||| || || ||||| |||||||||| Sbjct 147623 CCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGA 147682 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| ||||||||||| ||||| || || |||||||| ||| || | Sbjct 147683 TCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGT 147742 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| || || | | || || || | |||||| ||||| ||||| || || || || | Sbjct 147743 CGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 147802 Query 199620 A 199620 | Sbjct 147803 A 147803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907627936975