Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq61 116 4e-21 seq112 111 2e-19 seq190 104 3e-17 >seq61 Length=91600 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| || ||||| | || |||||| ||||| ||||||||||| Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || || |||||||| ||||| || | || |||||||| | || Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||||| ||||| | | | ||||| || || || Sbjct 25897 ATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 25838 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||||||||| || || || |||||||| ||||| Sbjct 25837 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq112 Length=719005 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||| ||| |||||||||||||| ||||||||| | || || | Sbjct 201903 ACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCC 201962 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||| ||||| ||||| ||||||||||| | || | | |||||| Sbjct 201963 ATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTT 202022 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | | | | |||||| || || || || | || || Sbjct 202023 ATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAAT 202082 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| || || |||||||| ||||| Sbjct 202083 AGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||| ||||| |||||||| |||| |||||| | || || Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| || | ||||||||||| | || | | |||||| || Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGA 202257 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || || || || || |||| |||||||| ||| Sbjct 202258 ATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCTTG 202317 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 202318 CCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || ||||| |||| ||||||||||| |||||||| Sbjct 202664 CTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAA 202723 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||| || ||||| || | || | || |||||||| Sbjct 202724 AATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTC 202762 >seq190 Length=335796 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| | Sbjct 147623 CCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGA 147682 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| || |||||||| | || | | ||||||||| ||||| ||||| | Sbjct 147683 TCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGT 147742 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || || || || || || | ||||||||| |||||||| || || || || | Sbjct 147743 CGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 147802 Query 46584 AG 46585 || Sbjct 147803 AG 147804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231864431000