Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq887 147 2e-30
seq61 122 9e-23
seq112 102 8e-17
>seq887
Length=503426
Score = 147 bits (162), Expect = 2e-30
Identities = 192/265 (72%), Gaps = 3/265 (1%)
Strand=Plus/Minus
Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254
|| ||||| | ||||||||| |||||| || ||||| |||||||| ||||| |
Sbjct 201867 TCGGAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATT 201808
Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314
|| |||||| | ||| |||||||||| || ||||| || || || ||| |||||||
Sbjct 201807 TGGACTTCTCCACTGAAGCGCTCGACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCG 201748
Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAG 133371
|| ||||| || ||||| ||||| | ||||||| || || | | | ||||
Sbjct 201747 AAGAAGGCAAGAACGTGAGAAATGAAGTATCGCTCGTCATCATTGAGTTTGTTGTTCCAG 201688
Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431
|| | ||||||||||||||| | |||||| ||||||| || || |||||||| ||
Sbjct 201687 TCATGAAGGTCCTTGGACAGGTCAATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTC 201628
Query 133432 TTGTACATACTCCACATGTCCGAAT 133456
|||||||| ||| || | |||||
Sbjct 201627 TTGTACATCTGCCAGATCTGCGAAT 201603
Score = 125 bits (138), Expect = 7e-24
Identities = 347/521 (67%), Gaps = 11/521 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| ||||| || || || || |||||||| || || || || || |
Sbjct 202519 CATGACACCAGCCTTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGC 202460
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710
| || ||| | ||| || || || |||||||| | |||||| ||| | |
Sbjct 202459 AAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCC 202400
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768
||| | | ||| || | || || || ||||| ||||||||| ||| |||| | |
Sbjct 202399 AAGGGCAAGGAGAAGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTT--GGAG 202342
Query 132769 TTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827
|| | || || ||| |||| || || || ||||| | ||| |||||||| | ||
Sbjct 202341 TTCATGCCGAGAAGA-GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAAC 202283
Query 132828 CGCGTCGGTGACGATTTCCCTAAC-GCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
|| || |||| || || ||| || || ||| || || ||| ||| || ||
Sbjct 202282 AGCCTCAGTGATGACATCTTGAACTGCTTGCTT-GCTTGGGCGATGCTTCAAGTGAGAGA 202224
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | |||||||||||| || | |||||||| | ||||| | |||||| ||
Sbjct 202223 AGAGGAGGCAAGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGA 202164
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| || | |||| ||||||||| || || || | ||| || || | |||||| ||
Sbjct 202163 AGGTAAGTCCGGCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCAC 202104
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-TCT 133065
||||||| ||||| ||||| ||||| || |||| ||||| | || |||| | ||
Sbjct 202103 TGAAGAAGATACCCTCAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACT 202044
Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105
| || | |||||| || | ||||| |||||||| |||||
Sbjct 202043 TGTCTTG-GATCCATCGTACAGCCCAGTCGGCCTTCTTCTT 202004
>seq61
Length=91600
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||||||||||||||||||| |||| || ||| | |
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| || || ||||| | |||||
Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| || || || |||| ||||||||| ||||||||||
Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || ||| | || |||||| || | || ||
Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 26017
>seq112
Length=719005
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| |||||||| | || || ||| | |
Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | ||||| || || | || || ||||| || || | ||||
Sbjct 202286 GATACCATCGACAATG--TAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACC 202229
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||||| ||| ||||| || || || || | ||||||| | |||||||
Sbjct 202228 AGCAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACA 202169
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| | || || |||||||| || ||| || | || ||
Sbjct 202168 ACATCCAGAAGGAGTCCACACTCCATTTGGTCCTTCGTCTGCGTGGTGG 202120
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || | || || || || || || | || || ||| | ||
Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | |||| ||| || | || || ||||| ||||| | |||||
Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| ||| |||| || | || || | | ||||||||||
Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAAC 201939
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||| ||| || ||||| |||||| |||||
Sbjct 201938 ATCCAAAAGGAGAGC-ACACTGCACTTGGTGTTGCGT 201903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500167016752000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |