Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq887 147 2e-30 seq61 122 9e-23 seq112 102 8e-17 >seq887 Length=503426 Score = 147 bits (162), Expect = 2e-30 Identities = 192/265 (72%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| |||||| || ||||| |||||||| ||||| | Sbjct 201867 TCGGAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATT 201808 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || |||||| | ||| |||||||||| || ||||| || || || ||| ||||||| Sbjct 201807 TGGACTTCTCCACTGAAGCGCTCGACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCG 201748 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAG 133371 || ||||| || ||||| ||||| | ||||||| || || | | | |||| Sbjct 201747 AAGAAGGCAAGAACGTGAGAAATGAAGTATCGCTCGTCATCATTGAGTTTGTTGTTCCAG 201688 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 || | ||||||||||||||| | |||||| ||||||| || || |||||||| || Sbjct 201687 TCATGAAGGTCCTTGGACAGGTCAATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTC 201628 Query 133432 TTGTACATACTCCACATGTCCGAAT 133456 |||||||| ||| || | ||||| Sbjct 201627 TTGTACATCTGCCAGATCTGCGAAT 201603 Score = 125 bits (138), Expect = 7e-24 Identities = 347/521 (67%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || || || || |||||||| || || || || || | Sbjct 202519 CATGACACCAGCCTTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGC 202460 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || ||| | ||| || || || |||||||| | |||||| ||| | | Sbjct 202459 AAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCC 202400 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768 ||| | | ||| || | || || || ||||| ||||||||| ||| |||| | | Sbjct 202399 AAGGGCAAGGAGAAGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTT--GGAG 202342 Query 132769 TTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || || ||| |||| || || || ||||| | ||| |||||||| | || Sbjct 202341 TTCATGCCGAGAAGA-GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAAC 202283 Query 132828 CGCGTCGGTGACGATTTCCCTAAC-GCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 || || |||| || || ||| || || ||| || || ||| ||| || || Sbjct 202282 AGCCTCAGTGATGACATCTTGAACTGCTTGCTT-GCTTGGGCGATGCTTCAAGTGAGAGA 202224 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | |||||||||||| || | |||||||| | ||||| | |||||| || Sbjct 202223 AGAGGAGGCAAGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGA 202164 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | |||| ||||||||| || || || | ||| || || | |||||| || Sbjct 202163 AGGTAAGTCCGGCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCAC 202104 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-TCT 133065 ||||||| ||||| ||||| ||||| || |||| ||||| | || |||| | || Sbjct 202103 TGAAGAAGATACCCTCAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACT 202044 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 | || | |||||| || | ||||| |||||||| ||||| Sbjct 202043 TGTCTTG-GATCCATCGTACAGCCCAGTCGGCCTTCTTCTT 202004 >seq61 Length=91600 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||||||||||||| |||| || ||| | | Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| || || ||||| | ||||| Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| ||||| || || || |||| ||||||||| |||||||||| Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || |||||| || | || || Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 26017 >seq112 Length=719005 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| | | Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | ||||| || || | || || ||||| || || | |||| Sbjct 202286 GATACCATCGACAATG--TAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACC 202229 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| ||||| || || || || | ||||||| | ||||||| Sbjct 202228 AGCAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACA 202169 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || |||||||| || ||| || | || || Sbjct 202168 ACATCCAGAAGGAGTCCACACTCCATTTGGTCCTTCGTCTGCGTGGTGG 202120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || || || || | || || ||| | || Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| ||| || | || || ||||| ||||| | ||||| Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | || || | | |||||||||| Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAAC 201939 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| ||| || ||||| |||||| ||||| Sbjct 201938 ATCCAAAAGGAGAGC-ACACTGCACTTGGTGTTGCGT 201903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167016752000