Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq700 125 3e-23 seq112 107 8e-18 seq1 105 3e-17 seq61 96.9 1e-14 >seq700 Length=197223 Score = 125 bits (138), Expect = 3e-23 Identities = 199/285 (70%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | |||||||| || || || || ||| | ||||| ||||| ||||| |||| Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || || ||||| || ||||| || | | ||||| || || || ||||| | Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | |||||||| || | | ||| | || || || | ||| || | |||| Sbjct 17646 TTGCATATGGCCTTG-------AGAAGGACGAG--GACAAGATCATTGCGGTCTATGATC 17696 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | ||||||||||| |||| ||||| ||| ||| || | || || || ||||| | Sbjct 17697 TCGGTGGAGGAACCTTCGATATCTCTGTTCTTGAAATCCAAAAGGGCGTTTTCGAAGTCA 17756 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 || | || || || || ||||| | |||||||||||| |||||| Sbjct 17757 AGTCTACAAACGGAGACACTCACTTGGGAGGTGAAGATTTTGATA 17801 >seq112 Length=719005 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||||| || ||||| |||||| Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || |||||||||||||| || || || || || || Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| | || || |||||||| ||||| | || || | || || || Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | ||||| || || || Sbjct 202166 ATCCAGAAGGAGTCCACACTCCATTTGGT 202138 >seq1 Length=799494 Score = 105 bits (116), Expect = 3e-17 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 420714 ATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTTCGTAAGAA 420773 ||| | ||||||||| ||||| || || | ||| |||| || || || | || ||| Sbjct 92041 ATCGAGTCCTCTTCTCCCAGCACGGCCAGACATCTGAATGAACTCTGAAGGT-GTCAGAT 92099 Query 420774 TC--TTCTACCACAATCATCATA-TTTAGATAATCCAGTAAATACAACAGTTTTTGTAGG 420830 || || | ||| ||||| | ||| || | | ||||||||| || || |||| ||| Sbjct 92100 TCCGTTGTGATACAC-CATCAAACTTTTGA-ACGCTAGTAAATACGACTGTCTTTGCAGG 92157 Query 420831 CATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTAAttttt-ttG 420889 |||||| | ||||| || ||||| || ||||| || |||||||| || || |||| ||| Sbjct 92158 CATATTCAGACCAATTGAGAAAGTCTCCGTTGCAAATAAAACTTTGATCAAGTTTTCTTG 92217 Query 420890 AATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATACCAGAATGATG 420941 | ||||||| || | |||| |||| ||| || | | |||||||||||| Sbjct 92218 GA-AAAGAATCTCGATCGTTTCCTTTAGAATTGGGAGCAGACCAGAATGATG 92268 >seq61 Length=91600 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || || || || || || ||||| || || || || ||||| || Sbjct 25788 ATCATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCT 25847 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||| || | | || || |||||||| |||||||| ||||| ||||| Sbjct 25848 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGAC 25907 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || |||||| |||| ||| | || || ||||||||||| || | || | | || || Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967 Query 391227 AATATTGATAAGGATGCAACACTTCA 391252 || || | ||||| |||| ||||| Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCA 25993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975694984649900