Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq700 125 3e-23
seq112 107 8e-18
seq1 105 3e-17
seq61 96.9 1e-14
>seq700
Length=197223
Score = 125 bits (138), Expect = 3e-23
Identities = 199/285 (70%), Gaps = 9/285 (3%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || | |||||||| || || || || ||| | ||||| ||||| ||||| ||||
Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || || || || ||||| || ||||| || | | ||||| || || || ||||| |
Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499
| |||||||| || | | ||| | || || || | ||| || | ||||
Sbjct 17646 TTGCATATGGCCTTG-------AGAAGGACGAG--GACAAGATCATTGCGGTCTATGATC 17696
Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559
| ||||||||||| |||| ||||| ||| ||| || | || || || ||||| |
Sbjct 17697 TCGGTGGAGGAACCTTCGATATCTCTGTTCTTGAAATCCAAAAGGGCGTTTTCGAAGTCA 17756
Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
|| | || || || || ||||| | |||||||||||| ||||||
Sbjct 17757 AGTCTACAAACGGAGACACTCACTTGGGAGGTGAAGATTTTGATA 17801
>seq112
Length=719005
Score = 107 bits (118), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||||||| || || || ||||| || ||||| ||||||
Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || |||||||||||||| || || || || || ||
Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || | |||||| | || || |||||||| ||||| | || || | || || ||
Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | ||||| || || ||
Sbjct 202166 ATCCAGAAGGAGTCCACACTCCATTTGGT 202138
>seq1
Length=799494
Score = 105 bits (116), Expect = 3e-17
Identities = 168/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 420714 ATCAATTCCTCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTTCGTAAGAA 420773
||| | ||||||||| ||||| || || | ||| |||| || || || | || |||
Sbjct 92041 ATCGAGTCCTCTTCTCCCAGCACGGCCAGACATCTGAATGAACTCTGAAGGT-GTCAGAT 92099
Query 420774 TC--TTCTACCACAATCATCATA-TTTAGATAATCCAGTAAATACAACAGTTTTTGTAGG 420830
|| || | ||| ||||| | ||| || | | ||||||||| || || |||| |||
Sbjct 92100 TCCGTTGTGATACAC-CATCAAACTTTTGA-ACGCTAGTAAATACGACTGTCTTTGCAGG 92157
Query 420831 CATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTAAttttt-ttG 420889
|||||| | ||||| || ||||| || ||||| || |||||||| || || |||| |||
Sbjct 92158 CATATTCAGACCAATTGAGAAAGTCTCCGTTGCAAATAAAACTTTGATCAAGTTTTCTTG 92217
Query 420890 AATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTATACCAGAATGATG 420941
| ||||||| || | |||| |||| ||| || | | ||||||||||||
Sbjct 92218 GA-AAAGAATCTCGATCGTTTCCTTTAGAATTGGGAGCAGACCAGAATGATG 92268
>seq61
Length=91600
Score = 96.9 bits (106), Expect = 1e-14
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106
|| ||| | || || || || || || || || ||||| || || || || ||||| ||
Sbjct 25788 ATCATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCT 25847
Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|| || | ||| || | | || || |||||||| |||||||| ||||| |||||
Sbjct 25848 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGAC 25907
Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226
|| |||||| |||| ||| | || || ||||||||||| || | || | | || ||
Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967
Query 391227 AATATTGATAAGGATGCAACACTTCA 391252
|| || | ||||| |||| |||||
Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCA 25993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975694984649900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |