Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq887 197 1e-44
seq700 118 8e-21
>seq887
Length=503426
Score = 197 bits (218), Expect = 1e-44
Identities = 934/1463 (64%), Gaps = 23/1463 (2%)
Strand=Plus/Plus
Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324
|| || | ||| || |||||||| | ||| || || || || ||||| ||||| || |
Sbjct 277342 ACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACACCACGA 277401
Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384
|||| |||||||| || | | || | |||| | || || || || ||| |
Sbjct 277402 GGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGT 277461
Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444
| || ||||||||||| | ||||||| || ||| || || || || | || |
Sbjct 277462 TGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAGGTAGAG 277521
Query 517445 AATAC-TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503
|| || |||| | || || || || || |||||||| ||| | ||||||||
Sbjct 277522 AAGACCTCTG-ACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTG 277580
Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TT 517561
||||| || || || | ||| || || | || | ||||| | |||| ||| | ||
Sbjct 277581 TCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATCTCGTT 277640
Query 517562 TGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 517620
| | || || | || | ||| ||||| || || || | ||||||||||||||
Sbjct 277641 GGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGC 277700
Query 517621 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG 517680
|||||| || ||||| || | | | || | | || |||||||| ||| | |
Sbjct 277701 AACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCAGTGAT 277760
Query 517681 AAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 517739
|| | ||| | | | |||||||||| || ||||| || | || || || || || |
Sbjct 277761 GAGCT-TCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACTT 277819
Query 517740 GTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCT 517797
||||| || | || | ||| ||| | || | | || || | | ||
Sbjct 277820 TAGATTTGTCGATCTTGGCATCAGCAAGGACACGGT--CGACTGGAGTAGTTGTGGATCG 277877
Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 517855
|| | ||| ||||| |||||||| ||| | || || || | || || |||
Sbjct 277878 GAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCA 277935
Query 517856 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 517915
|| || ||||| | ||| || | || || | ||||| | || ||||| || | ||
Sbjct 277936 ATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTTCGC 277995
Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--T 517973
|| || || ||||| ||||| | || | || | ||| || |||| | | | |
Sbjct 277996 TTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGC--ATTGGTAGAGAGAT 278053
Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033
| | |||| ||||| |||||| || | || | | || || | ||||| ||||
Sbjct 278054 CCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAAT 278113
Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093
| ||||| ||||| | ||| | || | || | | || | ||| | || || ||||
Sbjct 278114 CCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCAA 278173
Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153
| |||||||| ||||| |||||| ||||| | ||| ||||| || || || |
Sbjct 278174 TGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGCT 278233
Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213
| ||| || || || |||||||| |||| || || || || || || || || |
Sbjct 278234 CACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATGA 278293
Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273
||| | ||| || ||||| ||||| || || || || ||||||||||| || ||||
Sbjct 278294 TTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAAT 278353
Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGC 518333
|| || ||||| || || || | ||||| | | || | ||||| || ||
Sbjct 278354 CGGAGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTATGCCT 278413
Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393
|| || | | |||| ||| |||||||| || ||||||| ||| || | |||| |
Sbjct 278414 CAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGTT 278473
Query 518394 TGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 518452
| ||| |||| | || || | ||| || | || | ||| || |
Sbjct 278474 TCTTCTCACCCTTGA-ACTCGACCTCGACGACTGGCTTGCCAGCACGGTCAATGACAGTG 278532
Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTCATTAAAATCTCTACCAATTAA 518511
|| || | | |||||||| | || || || | || || | | ||| || |
Sbjct 278533 AAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCTGCGAACTTGCGACCGATCAG 278591
Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571
|| || ||||| || | || ||| | || || || || | |||| || || |||||
Sbjct 278592 ACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCATC 278651
Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631
|||||||||| |||| || || || || | |||| | || || || || || || || ||
Sbjct 278652 TCCAATCAGACGTTCGGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTGCCCTG 278711
Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691
||||| ||||||||||| | | | ||| | | | ||| ||||| | || ||
Sbjct 278712 GTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAGGTGGT 278771
Query 518692 TCCTAAATCAATACCAATAGCAA 518714
||| | ||||||||| || ||||
Sbjct 278772 TCCAAGATCAATACCTATGGCAA 278794
>seq700
Length=197223
Score = 118 bits (130), Expect = 8e-21
Identities = 196/282 (70%), Gaps = 6/282 (2%)
Strand=Plus/Minus
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
|||||||||||||||||||||| | ||| | ||| |||| | |||| ||||| |
Sbjct 17801 TATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGC 17742
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
| | || | | || || | ||| |||||| ||||| | |||| | |
Sbjct 17741 CCTTTTGGATTTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATA---GACCG 17685
Query 518145 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204
|| | || ||||| | || || ||||| ||||| |||| |||||||||||||| |
Sbjct 17684 CAATGAT---CTTGTCCTCGTCCTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628
Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264
|||| | | | | ||| || | ||| || ||| || ||||| ||||| ||||| |
Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGATTTGACCAGCATCCTTAGTAGCTTGAC 17568
Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
||| ||||||||||| || ||||||||||| | ||| ||||
Sbjct 17567 GTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGCAT 17526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780776498453050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |