Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq887 197 1e-44 seq700 118 8e-21 >seq887 Length=503426 Score = 197 bits (218), Expect = 1e-44 Identities = 934/1463 (64%), Gaps = 23/1463 (2%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || | ||| || |||||||| | ||| || || || || ||||| ||||| || | Sbjct 277342 ACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACACCACGA 277401 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 |||| |||||||| || | | || | |||| | || || || || ||| | Sbjct 277402 GGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGT 277461 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 | || ||||||||||| | ||||||| || ||| || || || || | || | Sbjct 277462 TGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAGGTAGAG 277521 Query 517445 AATAC-TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || || |||| | || || || || || |||||||| ||| | |||||||| Sbjct 277522 AAGACCTCTG-ACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTG 277580 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TT 517561 ||||| || || || | ||| || || | || | ||||| | |||| ||| | || Sbjct 277581 TCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATCTCGTT 277640 Query 517562 TGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 517620 | | || || | || | ||| ||||| || || || | |||||||||||||| Sbjct 277641 GGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGC 277700 Query 517621 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG 517680 |||||| || ||||| || | | | || | | || |||||||| ||| | | Sbjct 277701 AACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCAGTGAT 277760 Query 517681 AAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 517739 || | ||| | | | |||||||||| || ||||| || | || || || || || | Sbjct 277761 GAGCT-TCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACTT 277819 Query 517740 GTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCT 517797 ||||| || | || | ||| ||| | || | | || || | | || Sbjct 277820 TAGATTTGTCGATCTTGGCATCAGCAAGGACACGGT--CGACTGGAGTAGTTGTGGATCG 277877 Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 517855 || | ||| ||||| |||||||| ||| | || || || | || || ||| Sbjct 277878 GAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCA 277935 Query 517856 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 517915 || || ||||| | ||| || | || || | ||||| | || ||||| || | || Sbjct 277936 ATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTTCGC 277995 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--T 517973 || || || ||||| ||||| | || | || | ||| || |||| | | | | Sbjct 277996 TTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGC--ATTGGTAGAGAGAT 278053 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | |||| ||||| |||||| || | || | | || || | ||||| |||| Sbjct 278054 CCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAAT 278113 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | ||||| ||||| | ||| | || | || | | || | ||| | || || |||| Sbjct 278114 CCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCAA 278173 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | |||||||| ||||| |||||| ||||| | ||| ||||| || || || | Sbjct 278174 TGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGCT 278233 Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | ||| || || || |||||||| |||| || || || || || || || || | Sbjct 278234 CACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATGA 278293 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 ||| | ||| || ||||| ||||| || || || || ||||||||||| || |||| Sbjct 278294 TTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAAT 278353 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGC 518333 || || ||||| || || || | ||||| | | || | ||||| || || Sbjct 278354 CGGAGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTATGCCT 278413 Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393 || || | | |||| ||| |||||||| || ||||||| ||| || | |||| | Sbjct 278414 CAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGTT 278473 Query 518394 TGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 518452 | ||| |||| | || || | ||| || | || | ||| || | Sbjct 278474 TCTTCTCACCCTTGA-ACTCGACCTCGACGACTGGCTTGCCAGCACGGTCAATGACAGTG 278532 Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTCATTAAAATCTCTACCAATTAA 518511 || || | | |||||||| | || || || | || || | | ||| || | Sbjct 278533 AAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCTGCGAACTTGCGACCGATCAG 278591 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 || || ||||| || | || ||| | || || || || | |||| || || ||||| Sbjct 278592 ACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCATC 278651 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 |||||||||| |||| || || || || | |||| | || || || || || || || || Sbjct 278652 TCCAATCAGACGTTCGGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTGCCCTG 278711 Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691 ||||| ||||||||||| | | | ||| | | | ||| ||||| | || || Sbjct 278712 GTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAGGTGGT 278771 Query 518692 TCCTAAATCAATACCAATAGCAA 518714 ||| | ||||||||| || |||| Sbjct 278772 TCCAAGATCAATACCTATGGCAA 278794 >seq700 Length=197223 Score = 118 bits (130), Expect = 8e-21 Identities = 196/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 |||||||||||||||||||||| | ||| | ||| |||| | |||| ||||| | Sbjct 17801 TATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGC 17742 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 | | || | | || || | ||| |||||| ||||| | |||| | | Sbjct 17741 CCTTTTGGATTTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATA---GACCG 17685 Query 518145 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 || | || ||||| | || || ||||| ||||| |||| |||||||||||||| | Sbjct 17684 CAATGAT---CTTGTCCTCGTCCTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| | | | | ||| || | ||| || ||| || ||||| ||||| ||||| | Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGATTTGACCAGCATCCTTAGTAGCTTGAC 17568 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||| ||||||||||| || ||||||||||| | ||| |||| Sbjct 17567 GTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGCAT 17526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780776498453050