Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq887 430 2e-115
seq367 156 5e-33
seq700 91.5 2e-13
>seq887
Length=503426
Score = 430 bits (476), Expect = 2e-115
Identities = 1050/1586 (66%), Gaps = 15/1586 (1%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || |||||||| || || | ||| || || || || || ||
Sbjct 277216 TCATCCTCAGCCTTGTACTTTTCAGCCTCAGCCAACATGCGCTCGATATCCTCCTTGGAG 277275
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| | |||||||| || || || |||||| | |||||| || | |||| ||
Sbjct 277276 AGACGACCCTTATCGTTGGTGATGACAATCTTGTTGGATTTGCCAGTTCCCTTCTCGAGT 277335
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| || |||| ||| || || ||||||| |||||| | || | |||||||| |
Sbjct 277336 GCGGAGACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACA 277395
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || || | ||| ||||| || | || || | || | | |||| ||| |
Sbjct 277396 CCACGAGGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTG 277455
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||| ||||| || |||||| || ||| |||| || || ||
Sbjct 277456 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAG 277515
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | | ||||| | ||| || || || ||||| ||||| | | ||||
Sbjct 277516 GTAGAGAAGACCTCTGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTC 277575
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|| ||||| ||| |||| || || |||| || | || || | ||| | |
Sbjct 277576 ATTTGTCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATC 277635
Query 6989 TCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045
|| | || | | | | || || | | ||||| || ||||| | || ||
Sbjct 277636 TCGTTGGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCA 277695
Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105
||||| || ||||| || ||||| || | || || | || || || || || |||||
Sbjct 277696 TATGCAACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCA 277755
Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165
| | | | |||||| | || || || || || || ||||| | ||||| || |
Sbjct 277756 GTGATGAGCTTCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGA 277815
Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225
||||| ||||| |||||||| | || ||| ||||| || || | |
Sbjct 277816 ACTTTAGATTTGTCGATCTTGGCATCAGCAAGGACACGGTCGACTGGAG---TAGTTGTG 277872
Query 7226 ---CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282
||||| | |||| || || || || ||||| |||||||| ||||| || ||||||
Sbjct 277873 GATCGGAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGTGATGGAAGTGTAGAAA 277932
Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342
|||| || ||| | | || || || || |||| |||||||| | ||||| | |||
Sbjct 277933 TCAATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTT 277992
Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402
||||| || |||||||| || || || | ||||||||||||||| | || || | |
Sbjct 277993 CGCTTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGCATTGGTAGAGAGA 278052
Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462
|| ||||||||||| || || || || | |||||| | |||||| |||||||
Sbjct 278053 TCCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAA 278112
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||||||| || || || ||||| | ||||| || |||||||| | |||
Sbjct 278113 TCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCA 278172
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | || | || ||||| || || || ||||| || || |||||||| |||||
Sbjct 278173 ATGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGC 278232
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | ||| ||||| |||||||| || || || ||||| || || || || || ||
Sbjct 278233 TCACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATG 278292
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
|| || ||| ||| || || |||||| | || || || || ||||||| || |||
Sbjct 278293 ATTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAA 278352
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||| ||||| || ||||| || ||||| |||| |||| | ||| || || |
Sbjct 278353 TCGGAGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTATGCC 278412
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | ||| |||| || | || ||| || ||||| ||||||| | || |||
Sbjct 278413 TCAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGT 278472
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882
||| | ||||| || || || || || | | || || |||||| | || ||
Sbjct 278473 TTCTTCTCACCCTTGAACTCGACCTCGACGACTGGCTT---GCCAGCACGGTCAATGACA 278529
Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942
| | | ||| |||||||| | ||||||| || | ||||| | |||||
Sbjct 278530 GTGAAGGGGAAATGCTTCATATCAGCCTGGACCTCAGCATCTGCGAACTTGCGACCGATC 278589
Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002
|||||||| ||||| || || ||||| | ||||||||||| || ||||| || ||
Sbjct 278590 AGACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCA 278649
Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062
|| || || |||||||| | || || || || || | || || |||||||| ||
Sbjct 278650 TCTCCAATCAGACGTTC---GGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTG 278706
Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122
|| ||||| || ||||||||||| | | ||| | | ||| || || || || ||
Sbjct 278707 CCCTGGTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAG 278766
Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148
|| ||||| | ||||||||| || ||
Sbjct 278767 GTGGTTCCAAGATCAATACCTATGGC 278792
>seq367
Length=283117
Score = 156 bits (172), Expect = 5e-33
Identities = 482/736 (65%), Gaps = 15/736 (2%)
Strand=Plus/Plus
Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085
||||||| || | || ||||||||||| |||||||||||||| || | || | || |
Sbjct 172689 CGGCTTGAACAGCGGCACCGTATGCGACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCT 172748
Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145
||||| | || |||| | | | || || ||||| || || || ||||
Sbjct 172749 TCTTACCATCGAAGAAATCGCTCAGGAGCTTCTGTATCCGTGGGATACGGGTGGAACCAC 172808
Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTT 7205
| ||||| || ||||| | || || || ||||| || | || ||| || |
Sbjct 172809 CAACCAACACAATTTCGTCAACCTTGCTCTTGTCGATGTTAGCATCCTTAAGAACTTGTG 172868
Query 7206 CGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAAACGTGCAC 7262
|||| || |||| | || || ||| || | | || ||||| ||||| ||||
Sbjct 172869 CGACTGGGTCCAAAG--TTCCGTTGAAAG-CCTTGGAGTTCAAGTCCTCGAAACGGGCAC 172925
Query 7263 GGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTT 7322
|||| || | || ||| || |||| ||| | | || ||||| |||| || || |
Sbjct 172926 GGGTGATTTGGGCATTGAAGTCCTCGCCATCGAAAAGGGAGTCAATCTCAACAGTGGTCT 172985
Query 7323 GTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380
| || ||| | | | | || | ||| || |||||||| || || || | | || ||
Sbjct 172986 GGGCACCGTTGGAAAGA--GTCCTCTTAGCACGCTCACAAGCAGTACGAAGTCTTCGGAG 173043
Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440
||||| | | ||||| | ||| ||||| || || | ||||| | ||||||
Sbjct 173044 AGCACGAGCATCGCCGGAGAGATCCTTCTTGGTCTTGCGGGTGAACTCCTTTTTGAAGTG 173103
Query 7441 -TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499
|||| ||| | | ||||||||||| || ||||| || ||||| || ||||| || |
Sbjct 173104 GTCGAGCAAGT-TGGTATCGAAATCTTGTCCTCCCAAATGGGTATCACCAGCGGTTGCCT 173162
Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559
| || || | ||| || | || || | | || ||||| || || || ||||| |
Sbjct 173163 TAACGGTGAAAACACCACCCTGGATATTGAGAAGGGACACATCGAAAGTTCCTCCACCAA 173222
Query 7560 GGTCAAAAATGAGTAC-GTTCGTATCGTCGTCTTTGTTC--TTATCGAGACCGTACGCGA 7616
| || |||| | || |||| | | || | ||| | | ||||| || ||||
Sbjct 173223 GATCGTAAATCAAGACATTTCGCTCCTTGTTCGATTTTCCAGCACCAAGACCATATGCGA 173282
Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676
|||| || || ||||| ||||| || || || ||| ||| ||||| || |||| | |
Sbjct 173283 TAGCGGCGGCAGTTGGCTCATTGATGATTCGGAGAACGTTGAGGCCTGCGATAGCACCGG 173342
Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736
| || || || |||||||| || ||||| |||||||| || || || | ||| || |
Sbjct 173343 CGTCCTTGGTGGCTTGTCGCTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGCCT 173402
Query 7737 CCGTGACTTTCTTACC 7752
| || ||||||||
Sbjct 173403 TTGCAACCTTCTTACC 173418
>seq700
Length=197223
Score = 91.5 bits (100), Expect = 2e-13
Identities = 192/282 (68%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| ||||||||||| |||||||| || || || || | |||||||| || | ||
Sbjct 17800 ATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGCC 17741
Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
|| || || || ||| || | ||| || || || ||||| || ||| | | |
Sbjct 17740 CTTTTGGAT-TTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATAGACCGCAA 17682
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
| || | || ||||| ||| || || || || || | || || || ||||| |
Sbjct 17681 TGATCTTGTCCTCGTC------CTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692
|||| | | ||| ||| ||||| || || || ||| | ||||| || || |||||
Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGAT--TTGACCAGCATCCTTAGTAGCTTG 17570
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734
||||| ||||||||||||||||| || || || || || ||
Sbjct 17569 ACGTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGC 17528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635125456277000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |