Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq887 430 2e-115 seq367 156 5e-33 seq700 91.5 2e-13 >seq887 Length=503426 Score = 430 bits (476), Expect = 2e-115 Identities = 1050/1586 (66%), Gaps = 15/1586 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || |||||||| || || | ||| || || || || || || Sbjct 277216 TCATCCTCAGCCTTGTACTTTTCAGCCTCAGCCAACATGCGCTCGATATCCTCCTTGGAG 277275 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | |||||||| || || || |||||| | |||||| || | |||| || Sbjct 277276 AGACGACCCTTATCGTTGGTGATGACAATCTTGTTGGATTTGCCAGTTCCCTTCTCGAGT 277335 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||| || || ||||||| |||||| | || | |||||||| | Sbjct 277336 GCGGAGACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACA 277395 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||| ||||| || | || || | || | | |||| ||| | Sbjct 277396 CCACGAGGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTG 277455 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || |||||| || ||| |||| || || || Sbjct 277456 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAG 277515 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | | ||||| | ||| || || || ||||| ||||| | | |||| Sbjct 277516 GTAGAGAAGACCTCTGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTC 277575 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || ||||| ||| |||| || || |||| || | || || | ||| | | Sbjct 277576 ATTTGTCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATC 277635 Query 6989 TCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | | | || || | | ||||| || ||||| | || || Sbjct 277636 TCGTTGGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCA 277695 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 ||||| || ||||| || ||||| || | || || | || || || || || ||||| Sbjct 277696 TATGCAACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCA 277755 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | |||||| | || || || || || || ||||| | ||||| || | Sbjct 277756 GTGATGAGCTTCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGA 277815 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 ||||| ||||| |||||||| | || ||| ||||| || || | | Sbjct 277816 ACTTTAGATTTGTCGATCTTGGCATCAGCAAGGACACGGTCGACTGGAG---TAGTTGTG 277872 Query 7226 ---CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| || || || || ||||| |||||||| ||||| || |||||| Sbjct 277873 GATCGGAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGTGATGGAAGTGTAGAAA 277932 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| || ||| | | || || || || |||| |||||||| | ||||| | ||| Sbjct 277933 TCAATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTT 277992 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || |||||||| || || || | ||||||||||||||| | || || | | Sbjct 277993 CGCTTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGCATTGGTAGAGAGA 278052 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||||||||||| || || || || | |||||| | |||||| ||||||| Sbjct 278053 TCCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAA 278112 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||||||| || || || ||||| | ||||| || |||||||| | ||| Sbjct 278113 TCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCA 278172 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | || | || ||||| || || || ||||| || || |||||||| ||||| Sbjct 278173 ATGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGC 278232 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | ||| ||||| |||||||| || || || ||||| || || || || || || Sbjct 278233 TCACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATG 278292 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || || ||| ||| || || |||||| | || || || || ||||||| || ||| Sbjct 278293 ATTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAA 278352 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||| ||||| || ||||| || ||||| |||| |||| | ||| || || | Sbjct 278353 TCGGAGAAGTATGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTATGCC 278412 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| || | || ||| || ||||| ||||||| | || ||| Sbjct 278413 TCAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGT 278472 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | ||||| || || || || || | | || || |||||| | || || Sbjct 278473 TTCTTCTCACCCTTGAACTCGACCTCGACGACTGGCTT---GCCAGCACGGTCAATGACA 278529 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | ||| |||||||| | ||||||| || | ||||| | ||||| Sbjct 278530 GTGAAGGGGAAATGCTTCATATCAGCCTGGACCTCAGCATCTGCGAACTTGCGACCGATC 278589 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 |||||||| ||||| || || ||||| | ||||||||||| || ||||| || || Sbjct 278590 AGACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCA 278649 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || || || |||||||| | || || || || || | || || |||||||| || Sbjct 278650 TCTCCAATCAGACGTTC---GGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTG 278706 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || ||||| || ||||||||||| | | ||| | | ||| || || || || || Sbjct 278707 CCCTGGTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAG 278766 Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| | ||||||||| || || Sbjct 278767 GTGGTTCCAAGATCAATACCTATGGC 278792 >seq367 Length=283117 Score = 156 bits (172), Expect = 5e-33 Identities = 482/736 (65%), Gaps = 15/736 (2%) Strand=Plus/Plus Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 ||||||| || | || ||||||||||| |||||||||||||| || | || | || | Sbjct 172689 CGGCTTGAACAGCGGCACCGTATGCGACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCT 172748 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 ||||| | || |||| | | | || || ||||| || || || |||| Sbjct 172749 TCTTACCATCGAAGAAATCGCTCAGGAGCTTCTGTATCCGTGGGATACGGGTGGAACCAC 172808 Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTT 7205 | ||||| || ||||| | || || || ||||| || | || ||| || | Sbjct 172809 CAACCAACACAATTTCGTCAACCTTGCTCTTGTCGATGTTAGCATCCTTAAGAACTTGTG 172868 Query 7206 CGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAAACGTGCAC 7262 |||| || |||| | || || ||| || | | || ||||| ||||| |||| Sbjct 172869 CGACTGGGTCCAAAG--TTCCGTTGAAAG-CCTTGGAGTTCAAGTCCTCGAAACGGGCAC 172925 Query 7263 GGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTT 7322 |||| || | || ||| || |||| ||| | | || ||||| |||| || || | Sbjct 172926 GGGTGATTTGGGCATTGAAGTCCTCGCCATCGAAAAGGGAGTCAATCTCAACAGTGGTCT 172985 Query 7323 GTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 | || ||| | | | | || | ||| || |||||||| || || || | | || || Sbjct 172986 GGGCACCGTTGGAAAGA--GTCCTCTTAGCACGCTCACAAGCAGTACGAAGTCTTCGGAG 173043 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||| | | ||||| | ||| ||||| || || | ||||| | |||||| Sbjct 173044 AGCACGAGCATCGCCGGAGAGATCCTTCTTGGTCTTGCGGGTGAACTCCTTTTTGAAGTG 173103 Query 7441 -TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499 |||| ||| | | ||||||||||| || ||||| || ||||| || ||||| || | Sbjct 173104 GTCGAGCAAGT-TGGTATCGAAATCTTGTCCTCCCAAATGGGTATCACCAGCGGTTGCCT 173162 Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 | || || | ||| || | || || | | || ||||| || || || ||||| | Sbjct 173163 TAACGGTGAAAACACCACCCTGGATATTGAGAAGGGACACATCGAAAGTTCCTCCACCAA 173222 Query 7560 GGTCAAAAATGAGTAC-GTTCGTATCGTCGTCTTTGTTC--TTATCGAGACCGTACGCGA 7616 | || |||| | || |||| | | || | ||| | | ||||| || |||| Sbjct 173223 GATCGTAAATCAAGACATTTCGCTCCTTGTTCGATTTTCCAGCACCAAGACCATATGCGA 173282 Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 |||| || || ||||| ||||| || || || ||| ||| ||||| || |||| | | Sbjct 173283 TAGCGGCGGCAGTTGGCTCATTGATGATTCGGAGAACGTTGAGGCCTGCGATAGCACCGG 173342 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || |||||||| || ||||| |||||||| || || || | ||| || | Sbjct 173343 CGTCCTTGGTGGCTTGTCGCTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGCCT 173402 Query 7737 CCGTGACTTTCTTACC 7752 | || |||||||| Sbjct 173403 TTGCAACCTTCTTACC 173418 >seq700 Length=197223 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| |||||||| || || || || | |||||||| || | || Sbjct 17800 ATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGCC 17741 Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 || || || || ||| || | ||| || || || ||||| || ||| | | | Sbjct 17740 CTTTTGGAT-TTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATAGACCGCAA 17682 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | || ||||| ||| || || || || || | || || || ||||| | Sbjct 17681 TGATCTTGTCCTCGTC------CTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692 |||| | | ||| ||| ||||| || || || ||| | ||||| || || ||||| Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGAT--TTGACCAGCATCCTTAGTAGCTTG 17570 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 ||||| ||||||||||||||||| || || || || || || Sbjct 17569 ACGTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGC 17528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125456277000