Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq411 269 3e-67 seq887 109 7e-19 seq511 89.7 6e-13 seq444 87.8 2e-12 >seq411 Length=256942 Score = 269 bits (298), Expect = 3e-67 Identities = 1182/1827 (65%), Gaps = 59/1827 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || || ||| ||||||||||||| | ||||| | | || ||||| | Sbjct 122940 TACTTCGGTTTCAAGACCCTCGAACGATCATACCTTCTCCGCCTCGATGGCAAAATCTGC 122881 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 ||| ||| ||| ||||| ||||||| || || | || || || || || ||||| || Sbjct 122880 GAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAG 122821 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 | | | |||||||| || |||||| | |||| ||||| | ||||| Sbjct 122820 GCAGCAATTGAGACATATAACCTGATGTCAGGCAAATACTTCACACACGCTTCGCCAACA 122761 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 |||||| || || |||||| | ||| | || || ||| | |||| | ||| Sbjct 122760 CTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAG 122701 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || ||| || |||| || |||| ||| |||| |||||| ||||| ||| Sbjct 122700 GATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAAT 122641 Query 111846 GCTGGTGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 |||||||||||||| | | |||| || || |||||| | || ||| || Sbjct 122640 GCTGGTGGTATCGGTCTCAATGTCCACAGAATTC-GAGCCACCGGAGCTTACATTGCTGG 122582 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||||| || | || | ||||| |||| ||||| | || || ||| ||| || | Sbjct 122581 CACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAG 122522 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCT------ATCGCAGTCTATCTTGAGCC 112018 ||||| |||| | || | |||| || || |||| |||| || ||||| Sbjct 122521 ATATGTTGACCAGGGTG---GAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCC 122465 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG- 112077 ||||||||| ||| | | |||| |||||| | || || || || | || || | Sbjct 122464 ATGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGT 122405 Query 112078 -CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 |||| | || |||||||||| |||||||||||| |||||||| ||||||||| | ||| Sbjct 122404 TCGCGCT--CGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTT 122347 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 || ||| ||||| ||| | || | || || || || || ||||| | |||| | Sbjct 122346 GAAAAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTC 122287 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC- 112255 ||||| || || || || || ||| ||||| |||| | | | | | | | || Sbjct 122286 TATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTG-AGGGCAAGGGTC-GCA 122229 Query 112256 -GACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | || | | | | ||| | | |||||| | | |||||||||||||| Sbjct 122228 AGACCAT-CAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGA 122170 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || || || |||| |||||| || || |||||| | ||| Sbjct 122169 AACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGT 122110 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 || || |||||||| || || || || | || | | | ||||||| Sbjct 122109 ACCATTCGAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGTC 122050 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--A 112491 ||| |||||| | ||||| || || || |||| || || || || |||| | | Sbjct 122049 GCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGA--CATGAACAACGGTA 121992 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | | ||| | | || |||||||| || | ||| || ||||| |||| Sbjct 121991 CCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGTCAAGAACCTGAACAAGA 121932 Query 112552 TTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 | || || || | ||||| ||| ||| || ||||| || | | ||| | Sbjct 121931 TCATCGAGGTCAACTACTACCCAGTTCCAGA-AGCAAAGAAATCCAACTTCCGTCACAGA 121873 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATT 112669 || |||| ||| ||||| |||||||| || ||||| ||| | || || || | |||| Sbjct 121872 CCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTG-CGTCTGCCATT 121814 Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 || || || || ||| | |||| | || |||||||| || || |||||||| Sbjct 121813 CGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCGC 121754 Query 112730 TCTTGAGGCGAGTTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 | |||| | | || || | || ||| | | ||| ||||| || || | |||| Sbjct 121753 T-TTGA-CTGCTTCCGTTGATCTCGCTAAGAAGCT--TGGACCATACGAGACATACGAGG 121698 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 112843 | ||||||| || | || | |||||||| |||||||||| || | |||| || Sbjct 121697 GATCTCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGG-GTGTCACTCCAA-CTGA 121640 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 || || || ||||| |||| ||| ||| |||||| | | ||| | || |||||| | Sbjct 121639 TCTCTGGGATTGGGATTCTCTGAAGCAACAAATCAAGCAATATGGTATCCGCAACAGTTT 121580 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCT 112962 | | || || ||||| || ||| ||| |||| |||||||| || ||||||| Sbjct 121579 GCTTGTTGCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCT 121521 Query 112963 TTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 113021 | || || ||||| | |||||||| ||| | | ||||| |||||||| | Sbjct 121520 TCGAGCCATACACCTCCAACATCTACTCT-CGTCGTGTGCTCGCTGGAGAGTTCCAAGTC 121462 Query 113022 GTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA 113079 |||||| ||| | || | || || || || || || ||||| | | |||| Sbjct 121461 GTCAAC--CCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGA 121404 Query 113080 AGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139 || || || | || |||||||| ||||||||| || | ||||||| ||| | Sbjct 121403 AGAATAGAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACA 121344 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGG 113196 | ||| | ||| || || ||||||||| || | | | || | | |||| Sbjct 121343 TCAAGGCTCTCTACAAGACCGTCTGGGAAATCTCTCAG-CGTACCA--TCGTCCAGATGG 121287 Query 113197 CCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 113255 | || ||||||||| |||| |||||||||| |||| ||||| | |||| | | Sbjct 121286 CTGCCGATCGTGGT-GCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGAT 121228 Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAAC 113314 || || ||| |||| || | |||||| | | || |||||||| ||| ||||| || Sbjct 121227 CCTACAATGGGCAAGATCACCAGTATGCA-TTTTGCAGGTTGGAAGTTGGGCCTCAAGAC 121169 Query 113315 GGGGATGTATTACCTCCGATCTAAGGC 113341 |||||||| || |||||| | | ||| Sbjct 121168 TGGGATGTACTATCTCCGAACAATGGC 121142 >seq887 Length=503426 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||||| |||| | | ||||| || |||||||||||||||||| |||||| ||| Sbjct 202055 TTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTC 202114 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | |||| | ||| | |||||||| || |||||| | || || ||||||||||||| Sbjct 202115 GCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAG 202174 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | || |||||||||||||| || ||| || ||||| Sbjct 202175 TTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGC 202212 >seq511 Length=229750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG-TTGAT-TTTCGCGAGCGA 16113 ||||| | || ||||| ||||||||||||| |||||| || || | |||| | || | Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTC--GCCA 195241 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | | |||||||| | || | | || || ||||| || ||||| |||||||| | | Sbjct 195240 TTGCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGG 195181 Query 16174 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | || | ||| | || ||| || || | || || || ||| |||| || | ||| Sbjct 195180 AACCGCTG-ACACT-GAAGAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAG 195123 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||||| ||||| || || | || | || |||||||||||||| |||||| Sbjct 195122 AGTCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065 >seq444 Length=601236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 163548 ATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGG 163607 |||| ||| | |||||||| || || || || |||||| ||| | || || | Sbjct 430706 ATGGTCGTATAGCGCCACGCTCCGGCCTTGCATCCAAACACATGATCGATACGGGCGCAG 430647 Query 163608 GTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 163667 | || ||||| | |||||| ||| | |||||||| | || ||||||||||| || | Sbjct 430646 GCGTGATTGACGCGGACTACCGGGGCCAGGTCAAAGTACTACTTTTCAATCATGGGGAGA 430587 Query 163668 AAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAGA 163727 | || || ||||| ||| ||| || || |||| || || || || |||||| | | | Sbjct 430586 AGGATTTCGAGGTTAAGGAGGGAGATCGTGTCGCGCAGCTAGTGCTAGAGAGGATTTATA 430527 Query 163728 CACCCGATGTGGAGGAAATTGGTCTCCTTGAAGAGACGGAGAGGGGTGCGGGTGGTTTTG 163787 | || || |||| || || ||||| |||| | ||| || || ||||| |||| Sbjct 430526 CGCCGGAGGTGGTTGAGGTTCAGGAGCTTGAGGAGAGTGTGAGAGGCGCTGGTGGCTTTG 430467 Query 163788 G 163788 | Sbjct 430466 G 430466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735222666000