Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq411 269 3e-67
seq887 109 7e-19
seq511 89.7 6e-13
seq444 87.8 2e-12
>seq411
Length=256942
Score = 269 bits (298), Expect = 3e-67
Identities = 1182/1827 (65%), Gaps = 59/1827 (3%)
Strand=Plus/Minus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| || ||| ||||||||||||| | ||||| | | || ||||| |
Sbjct 122940 TACTTCGGTTTCAAGACCCTCGAACGATCATACCTTCTCCGCCTCGATGGCAAAATCTGC 122881
Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665
||| ||| ||| ||||| ||||||| || || | || || || || || ||||| ||
Sbjct 122880 GAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAG 122821
Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725
| | | |||||||| || |||||| | |||| ||||| | |||||
Sbjct 122820 GCAGCAATTGAGACATATAACCTGATGTCAGGCAAATACTTCACACACGCTTCGCCAACA 122761
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|||||| || || |||||| | ||| | || || ||| | |||| | |||
Sbjct 122760 CTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAG 122701
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| ||| || |||| || |||| ||| |||| |||||| ||||| |||
Sbjct 122700 GATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAAT 122641
Query 111846 GCTGGTGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904
|||||||||||||| | | |||| || || |||||| | || ||| ||
Sbjct 122640 GCTGGTGGTATCGGTCTCAATGTCCACAGAATTC-GAGCCACCGGAGCTTACATTGCTGG 122582
Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964
||||| || | || | ||||| |||| ||||| | || || ||| ||| || |
Sbjct 122581 CACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAG 122522
Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCT------ATCGCAGTCTATCTTGAGCC 112018
||||| |||| | || | |||| || || |||| |||| || |||||
Sbjct 122521 ATATGTTGACCAGGGTG---GAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCC 122465
Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG- 112077
||||||||| ||| | | |||| |||||| | || || || || | || || |
Sbjct 122464 ATGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGT 122405
Query 112078 -CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136
|||| | || |||||||||| |||||||||||| |||||||| ||||||||| | |||
Sbjct 122404 TCGCGCT--CGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTT 122347
Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196
|| ||| ||||| ||| | || | || || || || || ||||| | |||| |
Sbjct 122346 GAAAAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTC 122287
Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC- 112255
||||| || || || || || ||| ||||| |||| | | | | | | | ||
Sbjct 122286 TATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTG-AGGGCAAGGGTC-GCA 122229
Query 112256 -GACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
||| | | || | | | | ||| | | |||||| | | ||||||||||||||
Sbjct 122228 AGACCAT-CAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGA 122170
Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
| || | ||||| ||||| || || || |||| |||||| || || |||||| | |||
Sbjct 122169 AACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGT 122110
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433
|| || |||||||| || || || || | || | | | |||||||
Sbjct 122109 ACCATTCGAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGTC 122050
Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--A 112491
||| |||||| | ||||| || || || |||| || || || || |||| | |
Sbjct 122049 GCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGA--CATGAACAACGGTA 121992
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| | ||| | | || |||||||| || | ||| || ||||| ||||
Sbjct 121991 CCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGTCAAGAACCTGAACAAGA 121932
Query 112552 TTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGT 112610
| || || || | ||||| ||| ||| || ||||| || | | ||| |
Sbjct 121931 TCATCGAGGTCAACTACTACCCAGTTCCAGA-AGCAAAGAAATCCAACTTCCGTCACAGA 121873
Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATT 112669
|| |||| ||| ||||| |||||||| || ||||| ||| | || || || | ||||
Sbjct 121872 CCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTG-CGTCTGCCATT 121814
Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729
|| || || || ||| | |||| | || |||||||| || || ||||||||
Sbjct 121813 CGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCGC 121754
Query 112730 TCTTGAGGCGAGTTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785
| |||| | | || || | || ||| | | ||| ||||| || || | ||||
Sbjct 121753 T-TTGA-CTGCTTCCGTTGATCTCGCTAAGAAGCT--TGGACCATACGAGACATACGAGG 121698
Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 112843
| ||||||| || | || | |||||||| |||||||||| || | |||| ||
Sbjct 121697 GATCTCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGG-GTGTCACTCCAA-CTGA 121640
Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903
|| || || ||||| |||| ||| ||| |||||| | | ||| | || |||||| |
Sbjct 121639 TCTCTGGGATTGGGATTCTCTGAAGCAACAAATCAAGCAATATGGTATCCGCAACAGTTT 121580
Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCT 112962
| | || || ||||| || ||| ||| |||| |||||||| || |||||||
Sbjct 121579 GCTTGTTGCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCT 121521
Query 112963 TTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 113021
| || || ||||| | |||||||| ||| | | ||||| |||||||| |
Sbjct 121520 TCGAGCCATACACCTCCAACATCTACTCT-CGTCGTGTGCTCGCTGGAGAGTTCCAAGTC 121462
Query 113022 GTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA 113079
|||||| ||| | || | || || || || || || ||||| | | ||||
Sbjct 121461 GTCAAC--CCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGA 121404
Query 113080 AGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139
|| || || | || |||||||| ||||||||| || | ||||||| ||| |
Sbjct 121403 AGAATAGAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACA 121344
Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGG 113196
| ||| | ||| || || ||||||||| || | | | || | | ||||
Sbjct 121343 TCAAGGCTCTCTACAAGACCGTCTGGGAAATCTCTCAG-CGTACCA--TCGTCCAGATGG 121287
Query 113197 CCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 113255
| || ||||||||| |||| |||||||||| |||| ||||| | |||| | |
Sbjct 121286 CTGCCGATCGTGGT-GCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGAT 121228
Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAAC 113314
|| || ||| |||| || | |||||| | | || |||||||| ||| ||||| ||
Sbjct 121227 CCTACAATGGGCAAGATCACCAGTATGCA-TTTTGCAGGTTGGAAGTTGGGCCTCAAGAC 121169
Query 113315 GGGGATGTATTACCTCCGATCTAAGGC 113341
|||||||| || |||||| | | |||
Sbjct 121168 TGGGATGTACTATCTCCGAACAATGGC 121142
>seq887
Length=503426
Score = 109 bits (120), Expect = 7e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|||||| |||| | | ||||| || |||||||||||||||||| |||||| |||
Sbjct 202055 TTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTC 202114
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
| |||| | ||| | |||||||| || |||||| | || || |||||||||||||
Sbjct 202115 GCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAG 202174
Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
| || |||||||||||||| || ||| || |||||
Sbjct 202175 TTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGC 202212
>seq511
Length=229750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 167/238 (70%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG-TTGAT-TTTCGCGAGCGA 16113
||||| | || ||||| ||||||||||||| |||||| || || | |||| | || |
Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTC--GCCA 195241
Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173
| | |||||||| | || | | || || ||||| || ||||| |||||||| | |
Sbjct 195240 TTGCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGG 195181
Query 16174 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231
| || | ||| | || ||| || || | || || || ||| |||| || | |||
Sbjct 195180 AACCGCTG-ACACT-GAAGAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAG 195123
Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289
||||||||| ||||| || || | || | || |||||||||||||| ||||||
Sbjct 195122 AGTCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065
>seq444
Length=601236
Score = 87.8 bits (96), Expect = 2e-12
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 163548 ATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGG 163607
|||| ||| | |||||||| || || || || |||||| ||| | || || |
Sbjct 430706 ATGGTCGTATAGCGCCACGCTCCGGCCTTGCATCCAAACACATGATCGATACGGGCGCAG 430647
Query 163608 GTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 163667
| || ||||| | |||||| ||| | |||||||| | || ||||||||||| || |
Sbjct 430646 GCGTGATTGACGCGGACTACCGGGGCCAGGTCAAAGTACTACTTTTCAATCATGGGGAGA 430587
Query 163668 AAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAGA 163727
| || || ||||| ||| ||| || || |||| || || || || |||||| | | |
Sbjct 430586 AGGATTTCGAGGTTAAGGAGGGAGATCGTGTCGCGCAGCTAGTGCTAGAGAGGATTTATA 430527
Query 163728 CACCCGATGTGGAGGAAATTGGTCTCCTTGAAGAGACGGAGAGGGGTGCGGGTGGTTTTG 163787
| || || |||| || || ||||| |||| | ||| || || ||||| ||||
Sbjct 430526 CGCCGGAGGTGGTTGAGGTTCAGGAGCTTGAGGAGAGTGTGAGAGGCGCTGGTGGCTTTG 430467
Query 163788 G 163788
|
Sbjct 430466 G 430466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620735222666000
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