Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq411 206 3e-48
seq511 87.8 2e-12
>seq411
Length=256942
Score = 206 bits (228), Expect = 3e-48
Identities = 1157/1821 (64%), Gaps = 57/1821 (3%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| ||||| ||||| || || ||||| || |||||| | | |||||| | |
Sbjct 121151 CGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACTGGTG 121210
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | ||| ||| || ||| | |||||| || ||||| ||||| ||| |
Sbjct 121211 ATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGTAA 121270
Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584
||||||||| || ||||| | ||||| ||| || | ||||||||||| |||
Sbjct 121271 GCACCACGATCGGCAGCCATCTGGACGATGGTACGCTGAGAG---ATTTCCCAGACGGTC 121327
Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644
||||| | | |||||| ||| | ||||||| | |||||||| || |||||| |
Sbjct 121328 TTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGAACCACCATCT 121387
Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAAC 109703
| || || |||||| | | ||||| || || | | ||||| | ||||
Sbjct 121388 GCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAGATCCTTCAAC 121447
Query 109704 AAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762
|| ||| |||||| || || || ||||| || || || ||||||||| |
Sbjct 121448 AACCATGG--GTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGG 121505
Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA---GCTGTGG 109819
||||| || ||||| || || ||| || || ||||| | ||| | || ||||
Sbjct 121506 AGGTGTATGGCTCGAAGCATTCGTTGAACCCAAGAATTTG---ACTGGTACTGGCAGTGG 121562
Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879
|||| ||||| | || | |||||| |||| ||| | ||| | | | || |
Sbjct 121563 GCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCTTCAGAG 121622
Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939
|||||||| | || || | | ||| |||| ||||||||| ||||||
Sbjct 121623 AATCCCAATCCCAGAGATCAGT---TGGAGTGACACC---CCACATATCGTATTGAAGCT 121676
Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999
|||||| | | ||||| |||| | | ||||||| | || || || | |
Sbjct 121677 CACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAGCTTCTTAGCGAGAT 121736
Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059
| ||||| | || || || || ||||||||||| || || || | || ||
Sbjct 121737 CAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGA-GATGC 121795
Query 110060 GAGAC-TCTTCACAGTCGAAGGGAAGACCACAAAGAATA-AACACATCCGCTAGACCCTG 110117
| | || | ||||| || |||| || || | || ||||| || ||||| ||
Sbjct 121796 TTGGCCTCAGGTGACTCGAATGGCAGACG-CAGAGCCAAGAAGACATCAGCAAGACCTTG 121854
Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGG 110174
|||||| ||| |||| || | || | ||| || || |||| || ||
Sbjct 121855 AACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGC---TTCTGGAACTGG 121911
Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234
||| ||||| ||||||| | || || ||||| |||| || || || ||
Sbjct 121912 GTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGACCTCGTG 121971
Query 110235 GAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGA 110294
||| || | | | || | || | | | | | || || |||| || || || ||
Sbjct 121972 GAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTCAACGTAGGTGGGAAGCGCCATGGA 122031
Query 110295 CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAA 110354
|| | || || || ||| ||| ||| ||| || | ||| || || ||||
Sbjct 122032 TGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAG 122091
Query 110355 GTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCT 110413
|||||| || |||| ||| | |||||||| || | ||| | |||||| |||||||
Sbjct 122092 GTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCG-GTTGCAAGCATCCT 122150
Query 110414 TATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT 110473
| ||||||||| | ||| | ||||| || || || | | |||||||| | ||| | |
Sbjct 122151 TGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTT 122210
Query 110474 CGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTC 110531
|| || || |||| | | || || |||| ||||| ||| | |
Sbjct 122211 TCTGTGCCTTGATGGTCTTGCG--ACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGC 122268
Query 110532 CTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGAAGAGGG 110590
||| ||||| | || || ||||| | |||||| | || || || ||| || | || |
Sbjct 122269 CTCGAATTCATCACCATAGACATCTGCAAGACC-TGGGCACTCGTTGGGGCACATCAGTG 122327
Query 110591 ACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGA 110650
||| | ||| || ||||| | |||||||||||| || || ||||| | || |||
Sbjct 122328 TCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGA 122387
Query 110651 AAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710
| || ||||| ||| | ||||| | || || || || || || | | || |
Sbjct 122388 AGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGA 122447
Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCG-ATG-----GATCCCTTACGACGAC 110764
| ||| | ||||||||| ||||| |||| ||| ||| | || ||| | ||
Sbjct 122448 AAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCAC 122507
Query 110765 CCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824
|||||| |||||| | || ||| ||||| || ||||||||||||| || || |
Sbjct 122508 ---CCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGT 122564
Query 110825 CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884
||| | || ||||| || ||| | |||| ||||| ||||| || |
Sbjct 122565 TGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGA 122624
Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATA 110943
||| |||||||| || |||| || |||| | ||| |||| || | || |||
Sbjct 122625 GACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCT-TGAGCGTGTCGTAGATA 122683
Query 110944 CCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGC 111003
|||||||| ||| |||| || |||||| ||||| ||||| | || | | ||
Sbjct 122684 CCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGT 122743
Query 111004 GTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGT 111061
|| || ||| ||||||||| || | || || ||| || ||| |||||| ||
Sbjct 122744 GTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA--AGTATTTGCCTGACATCAGGT 122801
Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121
| ||||| || | ||| | | ||| | |||||||| |||| || || |||||||
Sbjct 122802 TATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGA 122861
Query 111122 ACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTA-ACTCTTCTCT 111180
||| | || || |||| | || ||||| | || ||||||| || | ||
Sbjct 122862 TCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGAAGGTATGATCGT-TCG 122920
Query 111181 AGGGTCTTGAGACCAAAGTAT 111201
|||||||||| ||| ||||||
Sbjct 122921 AGGGTCTTGAAACCGAAGTAT 122941
>seq511
Length=229750
Score = 87.8 bits (96), Expect = 2e-12
Identities = 163/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|| || | ||||||||| ||||| ||||| | ||| || || ||| | ||| |
Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTCGCCATT 195239
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791
|||| || || | || | | || |||||||| |||||||| || || || | |
Sbjct 195238 GCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGGAA 195179
Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || || ||||||| ||| || || | ||||| ||||| |||| || | ||||
Sbjct 195178 CCGCTGA-CACTGAA-GAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAGAG 195121
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907
||||||| |||||||||| |||| |||| || || || || ||||| || |||
Sbjct 195120 TCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588969189965000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |