Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq411 206 3e-48 seq511 87.8 2e-12 >seq411 Length=256942 Score = 206 bits (228), Expect = 3e-48 Identities = 1157/1821 (64%), Gaps = 57/1821 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| || || ||||| || |||||| | | |||||| | | Sbjct 121151 CGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACTGGTG 121210 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| ||| || ||| | |||||| || ||||| ||||| ||| | Sbjct 121211 ATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGTAA 121270 Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||||||||| || ||||| | ||||| ||| || | ||||||||||| ||| Sbjct 121271 GCACCACGATCGGCAGCCATCTGGACGATGGTACGCTGAGAG---ATTTCCCAGACGGTC 121327 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||| | | |||||| ||| | ||||||| | |||||||| || |||||| | Sbjct 121328 TTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGAACCACCATCT 121387 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAAC 109703 | || || |||||| | | ||||| || || | | ||||| | |||| Sbjct 121388 GCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAGATCCTTCAAC 121447 Query 109704 AAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 || ||| |||||| || || || ||||| || || || ||||||||| | Sbjct 121448 AACCATGG--GTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGG 121505 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA---GCTGTGG 109819 ||||| || ||||| || || ||| || || ||||| | ||| | || |||| Sbjct 121506 AGGTGTATGGCTCGAAGCATTCGTTGAACCCAAGAATTTG---ACTGGTACTGGCAGTGG 121562 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879 |||| ||||| | || | |||||| |||| ||| | ||| | | | || | Sbjct 121563 GCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCTTCAGAG 121622 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 |||||||| | || || | | ||| |||| ||||||||| |||||| Sbjct 121623 AATCCCAATCCCAGAGATCAGT---TGGAGTGACACC---CCACATATCGTATTGAAGCT 121676 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 |||||| | | ||||| |||| | | ||||||| | || || || | | Sbjct 121677 CACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAGCTTCTTAGCGAGAT 121736 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | ||||| | || || || || ||||||||||| || || || | || || Sbjct 121737 CAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGA-GATGC 121795 Query 110060 GAGAC-TCTTCACAGTCGAAGGGAAGACCACAAAGAATA-AACACATCCGCTAGACCCTG 110117 | | || | ||||| || |||| || || | || ||||| || ||||| || Sbjct 121796 TTGGCCTCAGGTGACTCGAATGGCAGACG-CAGAGCCAAGAAGACATCAGCAAGACCTTG 121854 Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGG 110174 |||||| ||| |||| || | || | ||| || || |||| || || Sbjct 121855 AACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGC---TTCTGGAACTGG 121911 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234 ||| ||||| ||||||| | || || ||||| |||| || || || || Sbjct 121912 GTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGACCTCGTG 121971 Query 110235 GAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGA 110294 ||| || | | | || | || | | | | | || || |||| || || || || Sbjct 121972 GAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTCAACGTAGGTGGGAAGCGCCATGGA 122031 Query 110295 CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAA 110354 || | || || || ||| ||| ||| ||| || | ||| || || |||| Sbjct 122032 TGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAG 122091 Query 110355 GTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCT 110413 |||||| || |||| ||| | |||||||| || | ||| | |||||| ||||||| Sbjct 122092 GTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCG-GTTGCAAGCATCCT 122150 Query 110414 TATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT 110473 | ||||||||| | ||| | ||||| || || || | | |||||||| | ||| | | Sbjct 122151 TGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTT 122210 Query 110474 CGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTC 110531 || || || |||| | | || || |||| ||||| ||| | | Sbjct 122211 TCTGTGCCTTGATGGTCTTGCG--ACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGC 122268 Query 110532 CTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGAAGAGGG 110590 ||| ||||| | || || ||||| | |||||| | || || || ||| || | || | Sbjct 122269 CTCGAATTCATCACCATAGACATCTGCAAGACC-TGGGCACTCGTTGGGGCACATCAGTG 122327 Query 110591 ACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGA 110650 ||| | ||| || ||||| | |||||||||||| || || ||||| | || ||| Sbjct 122328 TCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGA 122387 Query 110651 AAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710 | || ||||| ||| | ||||| | || || || || || || | | || | Sbjct 122388 AGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGA 122447 Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCG-ATG-----GATCCCTTACGACGAC 110764 | ||| | ||||||||| ||||| |||| ||| ||| | || ||| | || Sbjct 122448 AAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCAC 122507 Query 110765 CCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824 |||||| |||||| | || ||| ||||| || ||||||||||||| || || | Sbjct 122508 ---CCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGT 122564 Query 110825 CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884 ||| | || ||||| || ||| | |||| ||||| ||||| || | Sbjct 122565 TGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGA 122624 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATA 110943 ||| |||||||| || |||| || |||| | ||| |||| || | || ||| Sbjct 122625 GACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCT-TGAGCGTGTCGTAGATA 122683 Query 110944 CCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGC 111003 |||||||| ||| |||| || |||||| ||||| ||||| | || | | || Sbjct 122684 CCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGT 122743 Query 111004 GTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGT 111061 || || ||| ||||||||| || | || || ||| || ||| |||||| || Sbjct 122744 GTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA--AGTATTTGCCTGACATCAGGT 122801 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 | ||||| || | ||| | | ||| | |||||||| |||| || || ||||||| Sbjct 122802 TATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGA 122861 Query 111122 ACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTA-ACTCTTCTCT 111180 ||| | || || |||| | || ||||| | || ||||||| || | || Sbjct 122862 TCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGAAGGTATGATCGT-TCG 122920 Query 111181 AGGGTCTTGAGACCAAAGTAT 111201 |||||||||| ||| |||||| Sbjct 122921 AGGGTCTTGAAACCGAAGTAT 122941 >seq511 Length=229750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || || | ||||||||| ||||| ||||| | ||| || || ||| | ||| | Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTCGCCATT 195239 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || | || | | || |||||||| |||||||| || || || | | Sbjct 195238 GCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGGAA 195179 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || || ||||||| ||| || || | ||||| ||||| |||| || | |||| Sbjct 195178 CCGCTGA-CACTGAA-GAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAGAG 195121 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 ||||||| |||||||||| |||| |||| || || || || ||||| || ||| Sbjct 195120 TCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969189965000