Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq411 289 3e-73 seq887 102 1e-16 seq511 86.0 7e-12 >seq411 Length=256942 Score = 289 bits (320), Expect = 3e-73 Identities = 1186/1825 (65%), Gaps = 55/1825 (3%) Strand=Plus/Plus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| | | |||||||||||||||||| |||||||| || ||||| | | |||| Sbjct 121142 GCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGC 121201 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 ||| | || |||| ||| || ||| | |||| | ||||| |||| || Sbjct 121202 ATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGA 121261 Query 105701 TCAATG-AAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTT---GATTTC 105756 |||||| |||| |||||| | || ||||| | | || | | | || |||||| Sbjct 121262 TCAATGTAAGC-ACCACGATCGGCAGCCATCTGGACGA--TGGTACG-CTGAGAGATTTC 121317 Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816 ||| || || ||||||| |||||| ||| |||| || | | | ||||||||| || Sbjct 121318 CCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGA 121377 Query 105817 ACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAG 105876 ||| || | || || || |||||| | | ||||| || || || | || Sbjct 121378 ACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAG 121437 Query 105877 ATCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA 105934 ||| || | | ||| |||||| | |||||||| ||||| | | ||| Sbjct 121438 ATCCTTCAACAACCATGG--GTTGACGACTTGGAACTCTCCAGCGAGCACACGACG-AGA 121494 Query 105935 -TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 105992 |||||||| | ||||| || || |||||||| || |||||||| |||| ||| Sbjct 121495 GTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTAC 121553 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 ||| || ||||| || || | | | |||||| || | ||| | || |||||| ||| Sbjct 121554 TGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTT 121613 Query 106053 CCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTG 106110 ||| ||| |||||| || || || | |||| | || |||||||||| |||| Sbjct 121614 GCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGGAGTGACAC-CCCACATATCGTATTG 121671 Query 106111 AAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC- 106167 |||| | ||||| | ||| ||||| ||||| ||||||| || | || | |||| Sbjct 121672 AAGCTCACCCTTCGAGACT--GGAGATCCCTCGTATGTCTCGTATGGTCCAAG--CTTCT 121727 Query 106168 -AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 106226 ||| | ||| | || || | ||||| || || || |||||||| | | Sbjct 121728 TAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGT 121787 Query 106227 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCG 106285 | | | |||||| ||| ||| || |||| | || ||| | | || ||||| || Sbjct 121788 TGAGATGCTTGGCCTCAGGTGACTCGAATG-GCAGACGCAGAGCCAAGAAGACATCAGCA 121846 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 106344 |||||||||||||| | | ||||||||||||| || | || || || || ||| Sbjct 121847 AGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGCT-TCTGG 121905 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 ||| || || | || || |||| ||| || || ||| |||| || || Sbjct 121906 AACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGAC 121965 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTTTGGAAGG 106462 || || || || | | ||| | || | || | ||||| || || | ||||| Sbjct 121966 CTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TGTTCATGTCAACGTAGGTGGGAAGC 122023 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || || |||||||| || || ||| |||||| | | |||||| | ||| || Sbjct 122024 GCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCA 122083 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| |||||| || ||| || || | |||||| ||||| |||||| |||||| Sbjct 122084 GTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAA 122143 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 |||||||||||||||||| |||| | || ||||| || || | | |||||| | | | Sbjct 122144 GCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTAC 122203 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGT 106698 || | || | | || | |||| ||| | || | ||||| ||||| ||||| Sbjct 122204 CAAAGTTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTC 122259 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758 ||| || || || || || ||||| | || | |||||||| || || || || Sbjct 122260 GTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCA 122319 Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 | || | |||| ||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 122320 CATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAG 122379 Query 106819 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878 | | |||||||| | | ||| | ||||| | || || || ||| | ||||| Sbjct 122380 AGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAG 122439 Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 106935 | |||| | | ||| |||||||||||||| || |||| |||| | || ||| Sbjct 122440 GTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTT 122499 Query 106936 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| | || | ||||| | || ||| ||| || || | ||||| |||| || Sbjct 122500 GTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGAT 122559 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 ||| | || | || ||||| || ||| || | |||||| | |||| Sbjct 122560 ACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGAC 122619 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 | | || ||||| ||||| ||| ||||| ||||| | | || || | || Sbjct 122620 ATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTA 122679 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 |||||| | || || ||||| || | || | |||||| || | || | Sbjct 122680 GATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTG 122739 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATC 107233 |||||| || ||| |||||| ||||| | ||||| |||| || ||| |||||| Sbjct 122740 TGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAA-GTA-TTTGCCTGACATC 122797 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || |||||||| | | | || || || || ||||| ||||| | || |||||| Sbjct 122798 AGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGC 122857 Query 107294 ATAAACATGTATTG-GGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCT 107351 || | ||||| || ||| ||| || || |||||||||| || |||| || | || Sbjct 122858 ATGATCATGTGCTGCGGGCGTTCGCA-GATTTTGCCATCGAGGCGGAGAAGGTATGATCG 122916 Query 107352 TCTCAAGGGTTTTGAGACCAAAGTA 107376 | || ||||| |||| ||| ||||| Sbjct 122917 T-TCGAGGGTCTTGAAACCGAAGTA 122940 >seq887 Length=503426 Score = 102 bits (112), Expect = 1e-16 Identities = 330/510 (65%), Gaps = 2/510 (0%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| ||||||||||||||||| ||||| || |||| ||||| ||||| Sbjct 202500 TAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCATG 202441 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-TGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||| ||||| || | || | | | || | || || ||| ||||| Sbjct 202440 AAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCC-AAGGGCAAGGAGAAGACG 202382 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | ||| |||||||||| | |||| | |||||||| |||| ||| ||| Sbjct 202381 ATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCACA 202322 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || || || | ||| | | ||| || ||||| ||||| | | || | || Sbjct 202321 AGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTTG 202262 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTG 117284 | | || | | || | || ||| |||||| ||||| || Sbjct 202261 AACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCAGT 202202 Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || || ||||| | || || |||||| || || | |||||| || Sbjct 202201 GTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGGCC 202142 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | |||| | |||||| || ||||||||||||||| || Sbjct 202141 ACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACGGC 202082 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || |||| | ||||| || || | | ||||| | | |||| | || Sbjct 202081 GGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGTACAGC 202022 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||| | |||||||||| ||| || || || Sbjct 202021 CCAGTCGGCCTTCTTCTTAATGCAGGGGAC 201992 >seq511 Length=229750 Score = 86.0 bits (94), Expect = 7e-12 Identities = 166/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG-TTGAT-TTTCGCGGGCGA 9420 ||||| | || ||||| ||||||||||||| || || || || | |||| | || | Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTC--GCCA 195241 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 || | |||||||| | ||| || || || ||||| || ||||| |||||||| | | Sbjct 195240 TTGCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGG 195181 Query 9481 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | || | ||| | || ||| || || | || || || ||| |||| || | ||| Sbjct 195180 AACCGCTG-ACACT-GAAGAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAG 195123 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||||||||| ||||| || || | || | || || ||||||||||| |||||| Sbjct 195122 AGTCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973978347000