Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq411 289 3e-73
seq887 102 1e-16
seq511 86.0 7e-12
>seq411
Length=256942
Score = 289 bits (320), Expect = 3e-73
Identities = 1186/1825 (65%), Gaps = 55/1825 (3%)
Strand=Plus/Plus
Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640
||| | | |||||||||||||||||| |||||||| || ||||| | | ||||
Sbjct 121142 GCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGC 121201
Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700
||| | || |||| ||| || ||| | |||| | ||||| |||| ||
Sbjct 121202 ATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGA 121261
Query 105701 TCAATG-AAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTT---GATTTC 105756
|||||| |||| |||||| | || ||||| | | || | | | || ||||||
Sbjct 121262 TCAATGTAAGC-ACCACGATCGGCAGCCATCTGGACGA--TGGTACG-CTGAGAGATTTC 121317
Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816
||| || || ||||||| |||||| ||| |||| || | | | ||||||||| ||
Sbjct 121318 CCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGA 121377
Query 105817 ACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAG 105876
||| || | || || || |||||| | | ||||| || || || | ||
Sbjct 121378 ACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAG 121437
Query 105877 ATCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA 105934
||| || | | ||| |||||| | |||||||| ||||| | | |||
Sbjct 121438 ATCCTTCAACAACCATGG--GTTGACGACTTGGAACTCTCCAGCGAGCACACGACG-AGA 121494
Query 105935 -TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 105992
|||||||| | ||||| || || |||||||| || |||||||| |||| |||
Sbjct 121495 GTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTAC 121553
Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052
||| || ||||| || || | | | |||||| || | ||| | || |||||| |||
Sbjct 121554 TGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTT 121613
Query 106053 CCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTG 106110
||| ||| |||||| || || || | |||| | || |||||||||| ||||
Sbjct 121614 GCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGGAGTGACAC-CCCACATATCGTATTG 121671
Query 106111 AAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC- 106167
|||| | ||||| | ||| ||||| ||||| ||||||| || | || | ||||
Sbjct 121672 AAGCTCACCCTTCGAGACT--GGAGATCCCTCGTATGTCTCGTATGGTCCAAG--CTTCT 121727
Query 106168 -AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 106226
||| | ||| | || || | ||||| || || || |||||||| | |
Sbjct 121728 TAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGT 121787
Query 106227 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCG 106285
| | | |||||| ||| ||| || |||| | || ||| | | || ||||| ||
Sbjct 121788 TGAGATGCTTGGCCTCAGGTGACTCGAATG-GCAGACGCAGAGCCAAGAAGACATCAGCA 121846
Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 106344
|||||||||||||| | | ||||||||||||| || | || || || || |||
Sbjct 121847 AGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGCT-TCTGG 121905
Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404
||| || || | || || |||| ||| || || ||| |||| || ||
Sbjct 121906 AACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGAC 121965
Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTTTGGAAGG 106462
|| || || || | | ||| | || | || | ||||| || || | |||||
Sbjct 121966 CTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TGTTCATGTCAACGTAGGTGGGAAGC 122023
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|| || |||||||| || || ||| |||||| | | |||||| | ||| ||
Sbjct 122024 GCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCA 122083
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582
|| |||| |||||| || ||| || || | |||||| ||||| |||||| ||||||
Sbjct 122084 GTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAA 122143
Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642
|||||||||||||||||| |||| | || ||||| || || | | |||||| | | |
Sbjct 122144 GCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTAC 122203
Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGT 106698
|| | || | | || | |||| ||| | || | ||||| ||||| |||||
Sbjct 122204 CAAAGTTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTC 122259
Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758
||| || || || || || ||||| | || | |||||||| || || || ||
Sbjct 122260 GTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCA 122319
Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818
| || | |||| ||| || ||||| ||||||||||| || ||||| ||||| ||
Sbjct 122320 CATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAG 122379
Query 106819 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878
| | |||||||| | | ||| | ||||| | || || || ||| | |||||
Sbjct 122380 AGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAG 122439
Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 106935
| |||| | | ||| |||||||||||||| || |||| |||| | || |||
Sbjct 122440 GTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTT 122499
Query 106936 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995
||| | || | ||||| | || ||| ||| || || | ||||| |||| ||
Sbjct 122500 GTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGAT 122559
Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055
||| | || | || ||||| || ||| || | |||||| | ||||
Sbjct 122560 ACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGAC 122619
Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115
| | || ||||| ||||| ||| ||||| ||||| | | || || | ||
Sbjct 122620 ATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTA 122679
Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175
|||||| | || || ||||| || | || | |||||| || | || |
Sbjct 122680 GATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTG 122739
Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATC 107233
|||||| || ||| |||||| ||||| | ||||| |||| || ||| ||||||
Sbjct 122740 TGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAA-GTA-TTTGCCTGACATC 122797
Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293
|| |||||||| | | | || || || || ||||| ||||| | || ||||||
Sbjct 122798 AGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGC 122857
Query 107294 ATAAACATGTATTG-GGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCT 107351
|| | ||||| || ||| ||| || || |||||||||| || |||| || | ||
Sbjct 122858 ATGATCATGTGCTGCGGGCGTTCGCA-GATTTTGCCATCGAGGCGGAGAAGGTATGATCG 122916
Query 107352 TCTCAAGGGTTTTGAGACCAAAGTA 107376
| || ||||| |||| ||| |||||
Sbjct 122917 T-TCGAGGGTCTTGAAACCGAAGTA 122940
>seq887
Length=503426
Score = 102 bits (112), Expect = 1e-16
Identities = 330/510 (65%), Gaps = 2/510 (0%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || ||||| ||||||||||||||||| ||||| || |||| ||||| |||||
Sbjct 202500 TAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCATG 202441
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-TGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104
||||| ||||| || | || | | | || | || || ||| |||||
Sbjct 202440 AAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCC-AAGGGCAAGGAGAAGACG 202382
Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164
||| | ||| |||||||||| | |||| | |||||||| |||| ||| |||
Sbjct 202381 ATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCACA 202322
Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224
|| || || || | ||| | | ||| || ||||| ||||| | | || | ||
Sbjct 202321 AGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTTG 202262
Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTG 117284
| | || | | || | || ||| |||||| ||||| ||
Sbjct 202261 AACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCAGT 202202
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| |||||||| || || ||||| | || || |||||| || || | |||||| ||
Sbjct 202201 GTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGGCC 202142
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||||||| | |||| | |||||| || ||||||||||||||| ||
Sbjct 202141 ACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACGGC 202082
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
|| || |||| | ||||| || || | | ||||| | | |||| | ||
Sbjct 202081 GGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGTACAGC 202022
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTAC 117494
||| | |||||||||| ||| || || ||
Sbjct 202021 CCAGTCGGCCTTCTTCTTAATGCAGGGGAC 201992
>seq511
Length=229750
Score = 86.0 bits (94), Expect = 7e-12
Identities = 166/238 (70%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG-TTGAT-TTTCGCGGGCGA 9420
||||| | || ||||| ||||||||||||| || || || || | |||| | || |
Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTC--GCCA 195241
Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480
|| | |||||||| | ||| || || || ||||| || ||||| |||||||| | |
Sbjct 195240 TTGCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGG 195181
Query 9481 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538
| || | ||| | || ||| || || | || || || ||| |||| || | |||
Sbjct 195180 AACCGCTG-ACACT-GAAGAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAG 195123
Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596
||||||||| ||||| || || | || | || || ||||||||||| ||||||
Sbjct 195122 AGTCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589973978347000
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