Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq112 156 9e-33 seq61 138 3e-27 seq190 107 4e-18 >seq112 Length=719005 Score = 156 bits (172), Expect = 9e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || ||||| ||||| |||| ||| || | || ||||||||||| Sbjct 202371 GTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGCTG 202430 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| ||||| |||||||| ||||| || || || |||||||| || Sbjct 202431 CTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCTTGAATCTT 202490 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || ||||||||| || ||||| | |||| |||||||| || Sbjct 202491 CGACTTGACGTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAATGGTCTTTCCGGT 202550 Query 195117 CAAAGTTTTTACGA 195130 | || || |||| Sbjct 202551 AAGGGTCTTAACGA 202564 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||||||||| ||||| || |||||||| | || || | || || ||||||||| Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | ||||| || || |||||||||||||| ||||||||||| || Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || ||||| ||| || || ||||| || | ||||| || || Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGT 202831 >seq61 Length=91600 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| ||||| || || || ||||| |||| || || | || ||||| Sbjct 25999 ACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCA 25940 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||| ||||| || ||||||||||| ||||||||| Sbjct 25939 AGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGA 25880 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||||||| || || || ||||| | || || Sbjct 25879 ATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTG 25820 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 25819 CCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq190 Length=335796 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || |||||||||| ||||| | ||||| ||||| ||||| || |||||||| Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||| ||||| || || || || || ||||||||||| || |||||| || || Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || ||||| || || ||||| || | ||||| || || | || || ||||| Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 147803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468450909475