Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq61 111 1e-19
seq112 100 2e-16
>seq61
Length=91600
Score = 111 bits (122), Expect = 1e-19
Identities = 144/195 (74%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | || | || || || || || || || ||
Sbjct 25981 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAG 25922
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
||||| ||||||||||| | || | || |||||||| |||||| ||||| ||
Sbjct 25921 ATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT 25864
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| | ||| | |||||| |||| ||| |||||||| |||||||| |||||
Sbjct 25863 --TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTT 25806
Query 34967 CACAAAGATCTGCAT 34981
||||||||||||||
Sbjct 25805 GACAAAGATCTGCAT 25791
>seq112
Length=719005
Score = 100 bits (110), Expect = 2e-16
Identities = 144/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||||||||| ||||| |||||| | || | || ||
Sbjct 202366 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCG 202425
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || || |||||||||||| | || | |||||||| || |
Sbjct 202426 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCTTGA 202485
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
|||||| ||||| | ||||||| | ||| | ||| || || | || |||||
Sbjct 202486 ATCTTCGACTTGAC----GTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAATGGT 202541
Query 34949 TTTTCCCGTGAGAGTCTTCAC 34969
||||| || || ||||| ||
Sbjct 202542 CTTTCCGGTAAGGGTCTTAAC 202562
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | |||| || ||||| ||||| ||||| || | | | || |||| ||
Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || ||||| || || ||||| ||||||||| | || | |||||||| || |
Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGA 202257
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||| || || || | ||||| ||| | |||||| || | || |||||
Sbjct 202258 ATCTTCGACTTTAC--AT--TGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGT 202313
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || || ||||| || ||||||||||||
Sbjct 202314 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 202347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629940263400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |