Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq61 111 1e-19 seq112 100 2e-16 >seq61 Length=91600 Score = 111 bits (122), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || || || || || || || || Sbjct 25981 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAG 25922 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||||||||| | || | || |||||||| |||||| ||||| || Sbjct 25921 ATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT 25864 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | |||||| |||| ||| |||||||| |||||||| ||||| Sbjct 25863 --TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTT 25806 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 25805 GACAAAGATCTGCAT 25791 >seq112 Length=719005 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||||||||| ||||| |||||| | || | || || Sbjct 202366 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCG 202425 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || |||||||||||| | || | |||||||| || | Sbjct 202426 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCTTGA 202485 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | ||||||| | ||| | ||| || || | || ||||| Sbjct 202486 ATCTTCGACTTGAC----GTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAATGGT 202541 Query 34949 TTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||||| || Sbjct 202542 CTTTCCGGTAAGGGTCTTAAC 202562 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| || ||||| ||||| ||||| || | | | || |||| || Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || ||||| ||||||||| | || | |||||||| || | Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGA 202257 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || | ||||| ||| | |||||| || | || ||||| Sbjct 202258 ATCTTCGACTTTAC--AT--TGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGT 202313 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| || |||||||||||| Sbjct 202314 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 202347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629940263400