Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq411 141 1e-28 >seq411 Length=256942 Score = 141 bits (156), Expect = 1e-28 Identities = 443/682 (65%), Gaps = 8/682 (1%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| |||||||| ||||| |||| | | || || || || || || ||||||| || Sbjct 122269 CTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGT 122328 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| ||| |||| || | |||| || | |||||| ||||| ||||| || Sbjct 122329 CCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAA 122388 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | || | | |||||| ||||| ||| || || ||||| | || | Sbjct 122389 GAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAA 122448 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || |||||||| || | || || || | | |||| ||||| || || || || Sbjct 122449 AACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACC 122508 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | |||||||||||| ||||| | ||||| | ||| || || ||||| || || Sbjct 122509 CTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGA 122568 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC---TTATAT-TACTAATTGAAA 48480 | || || || || | ||| ||| ||| | |||| || | | || |||| | Sbjct 122569 GTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGAC--ATTG--A 122624 Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTC 48540 ||| |||||||| || | ||||| || | ||||| || || || || || || | Sbjct 122625 GACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATAC 122684 Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 | || ||||||||||| |||| | | || || || ||| | ||| | || | Sbjct 122685 CATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTG 122744 Query 48601 TTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTAT 48660 | || | | || | |||||| || || || | || |||| |||| | || |||| Sbjct 122745 TGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTTGCCTGACATCAGGTTAT 122804 Query 48661 ATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACA 48720 |||| ||||| | | || |||||| || || || | | ||||||||| | || Sbjct 122805 ATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCA 122864 Query 48721 TATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATG 48780 | | || || | ||| |||||| || | | ||| |||||| ||| | | Sbjct 122865 TGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGAAGGTATGATCGTTCGAGGG 122924 Query 48781 TTTTAAAACCAAAATAGTTGTA 48802 | || ||||| || || | ||| Sbjct 122925 TCTTGAAACCGAAGTATTGGTA 122946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102300617000