Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq887 143 2e-28 seq700 116 3e-20 >seq887 Length=503426 Score = 143 bits (158), Expect = 2e-28 Identities = 367/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | ||| | | Sbjct 278792 GCCATAGGTATTGATCTTGGAACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGA 278733 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 | ||||||||||||||||| || || ||| |||| || || || | |||| | ||||| Sbjct 278732 ATCGAAATTATTGCCAATGACCAGGGCAACCGAACGACACCTTCCTTTGTTGCCTTCACC 278673 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||| ||||| ||||| |||| | | | || || | ||| Sbjct 278672 GACACCGAACGTCTGATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAACCCGATCAAC 278613 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || |||||||| ||| | || || | ||||| | ||| | || ||||| Sbjct 278612 ACGGTCTTCGATGCTAAGCGTCTGATCGGTCGCAAGTTCGCA-GATGCTGAGGTCCAGGC 278554 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATG---TTTCTGGAAAACCTTATATTGA 550287 ||||||||||||| || ||| | ||| | || | |||| || || | || Sbjct 278553 TGATATGAAGCATTTCCCCTTC---ACTGTCATTGACCGTGCTGGCAAGCCAGTCGTCGA 278497 Query 550288 AG-CTACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | | | | | |||| | | |||||||| |||| ||| ||||||| || ||| || Sbjct 278496 GGTCGAGT--TCAAGGGTGAGAAGAAACAATTCACACCTGAAGAAATTTCTTCCATGATT 278439 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 || | || |||| | | || || || | ||||| | || | | || || Sbjct 278438 TTGGTTAAGATGAGAGAGACTGCTGAGGCATACCTTGGTGGAACCGTCAACAACGCCGTC 278379 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | || || |||||||| || || || || | ||||| || || || ||||| | | Sbjct 278378 GTCACAGTCCCAGCATACTTCTCCGATTCTCAGAGACAAGCCACAAAGGACGCTGGTCTT 278319 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || || || ||||| || || ||||| || ||||| || || || |||||||| Sbjct 278318 ATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCAGCGGCCATTGCATAT 278259 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 278258 GGTCTCGACAA 278248 >seq700 Length=197223 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || ||||| || || ||||||||||||||||| |||| Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || || || | || ||||| ||| | ||||||| || ||||||||||| | Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645 Query 550518 TTGCATATGGACTTGATAA 550536 |||||||||| ||||| || Sbjct 17646 TTGCATATGGCCTTGAGAA 17664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029247081828250