Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq887 143 2e-28
seq700 116 3e-20
>seq887
Length=503426
Score = 143 bits (158), Expect = 2e-28
Identities = 367/551 (67%), Gaps = 12/551 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| | | | ||| | |
Sbjct 278792 GCCATAGGTATTGATCTTGGAACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACAGA 278733
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
| ||||||||||||||||| || || ||| |||| || || || | |||| | |||||
Sbjct 278732 ATCGAAATTATTGCCAATGACCAGGGCAACCGAACGACACCTTCCTTTGTTGCCTTCACC 278673
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || |||| | | |||| ||||| ||||| |||| | | | || || | |||
Sbjct 278672 GACACCGAACGTCTGATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAACCCGATCAAC 278613
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGC 550230
|| | || |||||||| ||| | || || | ||||| | ||| | || |||||
Sbjct 278612 ACGGTCTTCGATGCTAAGCGTCTGATCGGTCGCAAGTTCGCA-GATGCTGAGGTCCAGGC 278554
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATG---TTTCTGGAAAACCTTATATTGA 550287
||||||||||||| || ||| | ||| | || | |||| || || | ||
Sbjct 278553 TGATATGAAGCATTTCCCCTTC---ACTGTCATTGACCGTGCTGGCAAGCCAGTCGTCGA 278497
Query 550288 AG-CTACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345
| | | | | |||| | | |||||||| |||| ||| ||||||| || ||| ||
Sbjct 278496 GGTCGAGT--TCAAGGGTGAGAAGAAACAATTCACACCTGAAGAAATTTCTTCCATGATT 278439
Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405
|| | || |||| | | || || || | ||||| | || | | || ||
Sbjct 278438 TTGGTTAAGATGAGAGAGACTGCTGAGGCATACCTTGGTGGAACCGTCAACAACGCCGTC 278379
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
| || || |||||||| || || || || | ||||| || || || ||||| | |
Sbjct 278378 GTCACAGTCCCAGCATACTTCTCCGATTCTCAGAGACAAGCCACAAAGGACGCTGGTCTT 278319
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
||||| || || || ||||| || || ||||| || ||||| || || || ||||||||
Sbjct 278318 ATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCAGCGGCCATTGCATAT 278259
Query 550526 GGACTTGATAA 550536
|| || || ||
Sbjct 278258 GGTCTCGACAA 278248
>seq700
Length=197223
Score = 116 bits (128), Expect = 3e-20
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| || || || ||||| || || ||||||||||||||||| ||||
Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | || || || | || ||||| ||| | ||||||| || ||||||||||| |
Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645
Query 550518 TTGCATATGGACTTGATAA 550536
|||||||||| ||||| ||
Sbjct 17646 TTGCATATGGCCTTGAGAA 17664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029247081828250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |