Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq112 114 1e-20
seq61 107 2e-18
>seq112
Length=719005
Score = 114 bits (126), Expect = 1e-20
Identities = 137/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| |||||||| || || || ||||| || |||||||| | || || | | || ||
Sbjct 202646 AACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTC 202705
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| ||||| || || || |||||||| || ||||| || ||||||||||| || |||||
Sbjct 202706 GAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTG 202765
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || ||| ||| | || | ||||||||| | || || |||||||||| || ||
Sbjct 202766 AATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTT 202825
Query 101440 GCCGGT 101445
|| ||
Sbjct 202826 CCCAGT 202831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || || || || ||||| || | | || | |||| ||
Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||| || || || || | ||||| || || || || || || || |||||||||
Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGA 202257
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || |||||| | || | || ||||| | || || || ||||||| || |||
Sbjct 202258 ATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCTTG 202317
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || ||||||||
Sbjct 202318 CCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
>seq61
Length=91600
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301
|||||| | | ||| | || | |||||| || || || || || || ||||| ||||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361
|| || | | | || || | |||||| || || || || | ||| || || || || ||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
||||||||| || |||||||| || || ||| | || | ||||| || | || ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839
Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| |||||||| || | || || ||||| |||||||||
Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 25790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396273932580225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |