Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq112 122 7e-23 >seq112 Length=719005 Score = 122 bits (134), Expect = 7e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || ||||||||||| || || |||||||| ||||| || ||||| || | | || | || Sbjct 201901 AGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTC-GCTCAACGTACG 201959 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | || ||||||||||| || || || |||| |||||| || || | |||| ||||| Sbjct 201960 GCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTC 202019 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||||| || ||| | | | | || || | ||| ||||| | || Sbjct 202020 CTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGT 202079 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| |||||||| || ||||| |||||||| Sbjct 202080 AATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| ||||| || ||||||||||| || | ||| |||| || Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| || || ||||||| |||| ||| |||||||| | Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766 Query 48678 ATCTT 48682 ||||| Sbjct 202767 ATCTT 202771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933305523775