Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq112 122 7e-23
>seq112
Length=719005
Score = 122 bits (134), Expect = 7e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607
|| ||||||||||| || || |||||||| ||||| || ||||| || | | || | ||
Sbjct 201901 AGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTC-GCTCAACGTACG 201959
Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667
| || ||||||||||| || || || |||| |||||| || || | |||| |||||
Sbjct 201960 GCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTC 202019
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
||| || ||||||| || ||| | | | | || || | ||| ||||| | ||
Sbjct 202020 CTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGT 202079
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| || ||||| |||||||| || ||||| ||||||||
Sbjct 202080 AATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 95.1 bits (104), Expect = 9e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || ||| ||| ||||| || ||||||||||| || | ||| |||| ||
Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| || || ||||||| |||| ||| |||||||| |
Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766
Query 48678 ATCTT 48682
|||||
Sbjct 202767 ATCTT 202771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380933305523775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |