Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq411 123 5e-23
>seq411
Length=256942
Score = 123 bits (136), Expect = 5e-23
Identities = 618/971 (64%), Gaps = 40/971 (4%)
Strand=Plus/Plus
Query 213173 GTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGT 213232
||| || ||| ||| ||| || || || ||| || || || |||| |||||| ||
Sbjct 121711 GTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGT 121770
Query 213233 TTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCG 213292
||||| |||| ||||||| | ||||||||| || ||| ||| |||| ||
Sbjct 121771 CTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACGCAGAGC 121830
Query 213293 TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
||| |||||||| || || || || || | | || |||||||| | | ||| ||
Sbjct 121831 CAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGA 121890
Query 213353 ---CTTGGAGCACTCCTCCAAG-GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGC 213408
||| | || || || ||||| ||||| |||||||||||||| |||||
Sbjct 121891 TTTCTTTG----CTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946
Query 213409 GGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT 213468
| | || | | ||| | | || | || | || | ||| |||| |
Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGG------AAGTCATAGGTACCGTTGT 122000
Query 213469 GCACA--AACTCAGGCAGG----GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522
|| ||| ||| || || ||| |||| ||| || || ||||| | |
Sbjct 122001 TCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTG 122060
Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582
| | |||||| | ||||| |||||||||||| || ||| ||||| || || ||||
Sbjct 122061 GTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCT 122120
Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642
||||| |||| |||| || |||||||||||||||| ||||| || |||||
Sbjct 122121 TCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGG 122180
Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702
|||| | || || | ||| || | | ||||||| | || | | |
Sbjct 122181 TTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGA----TGGTCTTGCGACCC 122236
Query 213703 CGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC-CCTGTC 213760
| | | |||||| |||| ||||| || | | |||||| | || |||| ||| |
Sbjct 122237 TTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTG-C 122295
Query 213761 CAGTCCCGGACAGGATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCT 213819
|| || || || ||| ||||| || |||| || || || | || || | ||
Sbjct 122296 AAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTC-AACACGCT 122354
Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879
||||||||| || |||| ||| || ||| ||| || || | | | || |||
Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414
Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939
|| ||||| || ||||| || | || || | || |||||||| ||||| | ||
Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474
Query 213940 AGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGT 213996
||||||| || || || || | |||| || |||||||| || ||||| |||
Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGT 122534
Query 213997 TGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACG 214056
|||| | | || | || || | |||||||| | ||||| || || || || || |
Sbjct 122535 TGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAG 122594
Query 214057 AGCCGGAGGCCC----TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAG 214112
|||| ||| | || | || ||| |||| || || ||||| || | ||| |||
Sbjct 122595 CTCCGGTGGCTCGAATTCTG--TGGACATTGAGA--CCGATACCACCAGCATTCTTAGAG 122650
Query 214113 ATCATGGCGCA 214123
|||||||| ||
Sbjct 122651 ATCATGGCACA 122661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931522029152000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |