Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq411 123 5e-23 >seq411 Length=256942 Score = 123 bits (136), Expect = 5e-23 Identities = 618/971 (64%), Gaps = 40/971 (4%) Strand=Plus/Plus Query 213173 GTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGT 213232 ||| || ||| ||| ||| || || || ||| || || || |||| |||||| || Sbjct 121711 GTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGT 121770 Query 213233 TTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCG 213292 ||||| |||| ||||||| | ||||||||| || ||| ||| |||| || Sbjct 121771 CTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACGCAGAGC 121830 Query 213293 TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 ||| |||||||| || || || || || | | || |||||||| | | ||| || Sbjct 121831 CAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGA 121890 Query 213353 ---CTTGGAGCACTCCTCCAAG-GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGC 213408 ||| | || || || ||||| ||||| |||||||||||||| ||||| Sbjct 121891 TTTCTTTG----CTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946 Query 213409 GGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT 213468 | | || | | ||| | | || | || | || | ||| |||| | Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGG------AAGTCATAGGTACCGTTGT 122000 Query 213469 GCACA--AACTCAGGCAGG----GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 || ||| ||| || || ||| |||| ||| || || ||||| | | Sbjct 122001 TCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTG 122060 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 | | |||||| | ||||| |||||||||||| || ||| ||||| || || |||| Sbjct 122061 GTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCT 122120 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| |||| |||| || |||||||||||||||| ||||| || ||||| Sbjct 122121 TCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGG 122180 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 |||| | || || | ||| || | | ||||||| | || | | | Sbjct 122181 TTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGA----TGGTCTTGCGACCC 122236 Query 213703 CGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC-CCTGTC 213760 | | | |||||| |||| ||||| || | | |||||| | || |||| ||| | Sbjct 122237 TTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTG-C 122295 Query 213761 CAGTCCCGGACAGGATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCT 213819 || || || || ||| ||||| || |||| || || || | || || | || Sbjct 122296 AAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTC-AACACGCT 122354 Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 ||||||||| || |||| ||| || ||| ||| || || | | | || ||| Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414 Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939 || ||||| || ||||| || | || || | || |||||||| ||||| | || Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474 Query 213940 AGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGT 213996 ||||||| || || || || | |||| || |||||||| || ||||| ||| Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGT 122534 Query 213997 TGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACG 214056 |||| | | || | || || | |||||||| | ||||| || || || || || | Sbjct 122535 TGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAG 122594 Query 214057 AGCCGGAGGCCC----TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAG 214112 |||| ||| | || | || ||| |||| || || ||||| || | ||| ||| Sbjct 122595 CTCCGGTGGCTCGAATTCTG--TGGACATTGAGA--CCGATACCACCAGCATTCTTAGAG 122650 Query 214113 ATCATGGCGCA 214123 |||||||| || Sbjct 122651 ATCATGGCACA 122661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522029152000