Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq411 174 3e-38 seq887 122 2e-22 >seq411 Length=256942 Score = 174 bits (192), Expect = 3e-38 Identities = 646/991 (65%), Gaps = 55/991 (6%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| || ||||||||||| |||||||||||| ||||||| ||||||||| || Sbjct 121748 GTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGT 121807 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| |||| |||||| | ||||| || || || || || || || | | | Sbjct 121808 GACTCGAATGGCAGACGCAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCA 121867 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || || ||||| | |||||| |||||||| || || || ||||||| ||| Sbjct 121868 ATAGGTCTGTGACGGAAGTTGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCG 121927 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACC------ACCTCGGTCAGCTTCTGG 221650 || | ||||| |||||| |||| |||| |||||| ||||||||| Sbjct 121928 ATGATCTTGTTCAGGTTCT------TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGG 121981 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 | || | | |||| || | | || || | | | || || | | Sbjct 121982 AAGT-------CA--TAGGTACCGTTGTTCATG---TCAACGTAGGTGGGAAGCGCCATG 122029 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACA 221769 |||| |||||| || ||||| || | || | | |||| | ||||| || || Sbjct 122030 GATGCCAAGTTACAGCAAGCGACCTCATC-TGGTGCGGAGTACTCGACAATCTCAGTGCA 122088 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||||| || ||||| || || | || || || ||| || ||| ||| || Sbjct 122089 CAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATC 122148 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| ||||| |||||||| || || | ||||| || ||| || Sbjct 122149 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAG 122208 Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATAC--CCGGT 221943 || |||| || | | ||| | ||| ||| |||| | || ||||| | || Sbjct 122209 TT-TCTGTGCCTTGATGGTCTTGC-GACCCTTGC--CCTCAGCCT---CATACTTCTCGT 122261 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||||||| | | || | ||||| || | || | || ||||| ||| | ||| || Sbjct 122262 ATAGAGCCT--CGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCA 122319 Query 222004 CATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||||| |||| |||| || | || || | || |||||| || || |||||||| | Sbjct 122320 CATCAGTGTCCATGTGCCA-TTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGA 122378 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | |||||||| | | || || ||| ||||| ||||| | ||||| | Sbjct 122379 GAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAA 122438 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| |||| || |||||||| ||||| || |||| ||| | || || ||||||| Sbjct 122439 GGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCT 122498 Query 222183 TGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240 |||| |||||||| | || ||| ||| ||| | |||||| | | || | || || Sbjct 122499 TGTTTCCACCCTGGT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAAC 122556 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 | |||||||| ||||| ||||| |||||| || ||| ||| | | | || Sbjct 122557 GATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC---GAATTCT 122613 Query 222301 GGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 | ||||| ||||||||||| || | || ||||||||||| || ||||||| | Sbjct 122614 -GTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCG 122672 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387 |||| ||| || || ||| || ||||| Sbjct 122673 TGTCGTAGATACCATCAATACTATCATCCTT 122703 >seq887 Length=503426 Score = 122 bits (134), Expect = 2e-22 Identities = 294/449 (65%), Gaps = 9/449 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || || || || ||||| ||||| ||||| ||||| || || | | Sbjct 202062 AGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTA 202121 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||| | ||| || || |||| |||| || ||| ||||||||| | || Sbjct 202122 TCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTT 202181 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || ||||| ||||| |||| | | |||||| | Sbjct 202182 CTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTC---TCACTTGAAGC 202238 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | || |||| | | || | | |||||| |||||||| || |||||| || Sbjct 202239 A-TCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAG 202297 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 |||||| | ||||||||| || || |||| Sbjct 202298 GAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAG 202357 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGACTCT 26233 ||||||||||||| ||| || || | ||| || |||| || || || || | ||| Sbjct 202358 CAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCC--CTTGGCAACGACAAAGTCT 202415 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| | | ||||| |||||||| ||||| ||||| || | | || ||||| |||| Sbjct 202416 ACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACT 202475 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||| ||| | || || || || ||| Sbjct 202476 TCTTTGAGAAGCGTGTTGGTGATTACCAA 202504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/237 (68%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| ||||||||| || |||||||| ||| Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGC-AT------TTTCT 25589 |||||||| | | | |||| || | ||| || || ||| || ||||| Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | |||| | || ||||| || ||||| |||||||| || |||||||| || ||| Sbjct 201731 C----ACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGA 201786 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | | |||| | ||||| || ||||| ||| |||||||| ||||| || Sbjct 201787 GCGCTTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAAT 201843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834060232000