Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq411 174 3e-38
seq887 122 2e-22
>seq411
Length=256942
Score = 174 bits (192), Expect = 3e-38
Identities = 646/991 (65%), Gaps = 55/991 (6%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|||| || ||||||||||| |||||||||||| ||||||| ||||||||| ||
Sbjct 121748 GTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGT 121807
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| ||| |||| |||||| | ||||| || || || || || || || | | |
Sbjct 121808 GACTCGAATGGCAGACGCAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCA 121867
Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596
|| || ||||| | |||||| |||||||| || || || ||||||| |||
Sbjct 121868 ATAGGTCTGTGACGGAAGTTGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCG 121927
Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACC------ACCTCGGTCAGCTTCTGG 221650
|| | ||||| |||||| |||| |||| |||||| |||||||||
Sbjct 121928 ATGATCTTGTTCAGGTTCT------TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGG 121981
Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710
| || | | |||| || | | || || | | | || || | |
Sbjct 121982 AAGT-------CA--TAGGTACCGTTGTTCATG---TCAACGTAGGTGGGAAGCGCCATG 122029
Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACA 221769
|||| |||||| || ||||| || | || | | |||| | ||||| || ||
Sbjct 122030 GATGCCAAGTTACAGCAAGCGACCTCATC-TGGTGCGGAGTACTCGACAATCTCAGTGCA 122088
Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829
|||||| || ||||| || || | || || || ||| || ||| ||| ||
Sbjct 122089 CAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATC 122148
Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889
|||||||||||| ||||| |||||||| || || | ||||| || ||| ||
Sbjct 122149 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAG 122208
Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATAC--CCGGT 221943
|| |||| || | | ||| | ||| ||| |||| | || ||||| | ||
Sbjct 122209 TT-TCTGTGCCTTGATGGTCTTGC-GACCCTTGC--CCTCAGCCT---CATACTTCTCGT 122261
Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003
||||||| | | || | ||||| || | || | || ||||| ||| | ||| ||
Sbjct 122262 ATAGAGCCT--CGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCA 122319
Query 222004 CATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062
|||||| |||| |||| || | || || | || |||||| || || |||||||| |
Sbjct 122320 CATCAGTGTCCATGTGCCA-TTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGA 122378
Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122
| || | |||||||| | | || || ||| ||||| ||||| | ||||| |
Sbjct 122379 GAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAA 122438
Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
|||| |||| || |||||||| ||||| || |||| ||| | || || |||||||
Sbjct 122439 GGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCT 122498
Query 222183 TGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240
|||| |||||||| | || ||| ||| ||| | |||||| | | || | || ||
Sbjct 122499 TGTTTCCACCCTGGT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAAC 122556
Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300
| |||||||| ||||| ||||| |||||| || ||| ||| | | | ||
Sbjct 122557 GATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC---GAATTCT 122613
Query 222301 GGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356
| ||||| ||||||||||| || | || ||||||||||| || ||||||| |
Sbjct 122614 -GTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCG 122672
Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387
|||| ||| || || ||| || |||||
Sbjct 122673 TGTCGTAGATACCATCAATACTATCATCCTT 122703
>seq887
Length=503426
Score = 122 bits (134), Expect = 2e-22
Identities = 294/449 (65%), Gaps = 9/449 (2%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| || || || || || ||||| ||||| ||||| ||||| || || | |
Sbjct 202062 AGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTA 202121
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||| | ||| || || |||| |||| || ||| ||||||||| | ||
Sbjct 202122 TCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTT 202181
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| ||||||||||| |||| || ||||| ||||| |||| | | |||||| |
Sbjct 202182 CTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTC---TCACTTGAAGC 202238
Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115
| || |||| | | || | | |||||| |||||||| || |||||| ||
Sbjct 202239 A-TCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAG 202297
Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175
|||||| | ||||||||| || || ||||
Sbjct 202298 GAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAG 202357
Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGACTCT 26233
||||||||||||| ||| || || | ||| || |||| || || || || | |||
Sbjct 202358 CAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCC--CTTGGCAACGACAAAGTCT 202415
Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293
||| | | ||||| |||||||| ||||| ||||| || | | || ||||| ||||
Sbjct 202416 ACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACT 202475
Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||||||| ||| | || || || || |||
Sbjct 202476 TCTTTGAGAAGCGTGTTGGTGATTACCAA 202504
Score = 86.0 bits (94), Expect = 1e-11
Identities = 162/237 (68%), Gaps = 11/237 (5%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| ||||||||| || |||||||| |||
Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGC-AT------TTTCT 25589
|||||||| | | | |||| || | ||| || || ||| || |||||
Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730
Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
| |||| | || ||||| || ||||| |||||||| || |||||||| || |||
Sbjct 201731 C----ACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGA 201786
Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
| | |||| | ||||| || ||||| ||| |||||||| ||||| ||
Sbjct 201787 GCGCTTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAAT 201843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928834060232000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |