Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq887 165 5e-35
seq700 104 2e-16
seq61 102 5e-16
seq112 96.9 2e-14
seq124 91.5 1e-12
>seq887
Length=503426
Score = 165 bits (182), Expect = 5e-35
Identities = 371/553 (67%), Gaps = 6/553 (1%)
Strand=Plus/Minus
Query 474327 TTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386
|||| || ||||||||| | ||||| || ||| ||||| | | | | | ||| |
Sbjct 278794 TTGCCATAGGTATTGATCTTGGAACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACA 278735
Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446
| | ||||| |||||||||||||| || || |||| ||||| || | |||| | || |
Sbjct 278734 GAATCGAAATTATTGCCAATGACCAGGGCAACCGAACGACACCTTCCTTTGTTGCCTTCA 278675
Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506
| || || |||| ||| ||||||||||| || || |||| | || || || | |
Sbjct 278674 CCGACACCGAACGTCTGATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAACCCGATCA 278615
Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566
| || | || |||||||| | |||| ||||| || || | ||| | |||||
Sbjct 278614 ACACGGTCTTCGATGCTAAGCGTCTGATCGGTCGCAAGTTCGCAGATGCTGAGGTCCAGG 278555
Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG 474626
|||||||| |||| || || | || || | || ||| || ||| | || |
Sbjct 278554 CTGATATGAAGCATTTCCCCTTCACTGTCATTGACCGTGCTGGCAAGCCAGTCGTCGAGG 278495
Query 474627 --CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| | || | ||||| | |||||||| |||| ||| |||||||||| ||| ||||
Sbjct 278494 TCGAGTTCAAG--GGTGAGAAGAAACAATTCACACCTGAAGAAATTTCTTCCATGATTTT 278437
Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743
| || |||| | | || || ||| |||| ||||| | || | | || ||
Sbjct 278436 GGTTAAGATGAGAGAGACTGCTGAG-GCATACCTTGGTGGAACCGTCAACAACGCCGTCG 278378
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| || || |||||||| || |||||||| | ||||| || || || || || |
Sbjct 278377 TCACAGTCCCAGCATACTTCTCCGATTCTCAGAGACAAGCCACAAAGGACGCTGGTCTTA 278318
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
|||| ||||| || ||| | || || || || || || || ||||| || |||| ||||
Sbjct 278317 TTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCAGCGGCCATTGCATATG 278258
Query 474864 GTCTTGATAAGAA 474876
|||| || |||||
Sbjct 278257 GTCTCGACAAGAA 278245
Score = 122 bits (134), Expect = 6e-22
Identities = 519/812 (64%), Gaps = 21/812 (3%)
Strand=Plus/Minus
Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424
|| ||||| || | || | |||||||| ||||| ||||| ||||| || | || |
Sbjct 278144 ACCGCTGGTGACACTCACTTGGGTGGTGAGGATTTCGATAACAGACTCGTCAACCAC--T 278087
Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAA 475484
|| | || |||||| | ||| |||| ||||| || || |||| || |
Sbjct 278086 TCGTCAACGAATTCAAGCGAAAACATAAGAAGGATCTCTCTACCAATGCTCGTGCCCTTC 278027
Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544
| ||||| | || |||||||| || || |||||| | || ||||| | | |||||
Sbjct 278026 GTCGTCTCCGCACAGCTTGTGAGCGAGCCAAGCGAACCCTCTCTTCATCCGCACAAACCT 277967
Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604
| | || | || |||||||| || || ||||||| | ||| || || | |||
Sbjct 277966 CCATCGAGATCGACTCTCTTTTCGAGGGTATTGATTTCTACACTTCCATCACCCGTGCTC 277907
Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664
|| ||||| |||| || || || || |||| | || || || | || |
Sbjct 277906 GTTTCGAAGAGCTTTGCCAGGACCTTTTCCGATCCACAACTACTCCAGTCGACCGTGTCC 277847
Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724
| ||| | || | |||||||| |||| || || || || || || |||||||| |
Sbjct 277846 TTGCTGATGCCAAGATCGACAAATCTAAAGTTCACGAGATCGTCCTCGTCGGAGGTTCCA 277787
Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTT 475779
| | ||||||| ||| |||| ||| ||||| || || ||||| || ||
Sbjct 277786 CTCGTATTCCAAGAATTC-AGAA--GCT--CATCACTGATTACTTCAATGGCAAGGAGCC 277732
Query 475780 AAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837
|| |||| | || ||||| || |||||||||||||| ||||| ||||| || ||
Sbjct 277731 CAAC--AAGTCCATCAACCCTGACGAGGCTGTTGCATATGGTGCTGCCGTCCAGGCTGCC 277674
Query 475838 ATTTTATC---AGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACT 475894
||| | || || | ||| | || || | ||| | || | || || |
Sbjct 277673 ATTCTCTCTGGAGATACTTCATCCAAGTCCACCAACGAGATTCTCCTCCTCGATGTTGCG 277614
Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954
||| | || | ||| | || || | ||| || ||||| || || ||| |||||
Sbjct 277613 CCATTGTCCCTCGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAAC 277554
Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014
|| | |||||| ||| || ||| | || || || || | || || || || | |
Sbjct 277553 ACCACCATCCCAACCAAGAAGTCAGAGGTCTTCTCTACCTTCTCCGACAACCAGCCTGGT 277494
Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074
|| |||||| |||| || ||||| | || ||| || || || ||| | ||
Sbjct 277493 GTGCTTATCCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTATGGGC 277434
Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134
| || | || ||||| || || ||||| | || || || ||||| || ||||||
Sbjct 277433 AAGTTCGAGCTCACTGGTATCCCACCAGCTCCTCGTGGTGTCCCACAAATCGAGGTTACT 277374
Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGT 476166
|| ||| ||||||| || || ||| | || ||
Sbjct 277373 TTCGATCTTGATGCCAACGGAATTATGAACGT 277342
>seq700
Length=197223
Score = 104 bits (114), Expect = 2e-16
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| || || ||||| ||||||||||||||||| ||||| ||||
Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||| || ||| | || ||| | ||| | | ||||| ||||| || || || |
Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645
Query 474855 TTGCTTATGGTCTTGATAAG 474874
|||| ||||| ||||| |||
Sbjct 17646 TTGCATATGGCCTTGAGAAG 17665
>seq61
Length=91600
Score = 102 bits (112), Expect = 5e-16
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|||||||||||||| ||||| || || |||||||| || ||||| ||||| |||||||||
Sbjct 25945 TCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTG 25886
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
||||||||||| |||||| || || || || | | | || || ||||| ||
Sbjct 25885 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAA-CCTCGAGGGTGAT 25827
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || ||||| ||||| || || || ||
Sbjct 25826 GGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 25794
>seq112
Length=719005
Score = 96.9 bits (106), Expect = 2e-14
Identities = 122/166 (73%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| || ||||| || | |||||| || ||| ||| || || ||||||| ||
Sbjct 202634 ACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATG--TTGTAATCAGAGAGG 202691
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | || || || |||||||| || ||||| | |||||| ||||| ||||||||
Sbjct 202692 GTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATG 202751
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714
|||||||||||||||||||| ||||||| || ||||| ||||
Sbjct 202752 CCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAG 202797
Score = 86.0 bits (94), Expect = 4e-11
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| || ||||| |||||||| ||||||||||| || || || ||||| || |||||
Sbjct 202420 TCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTA 202479
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
||||||||||| ||||| || ||||| || | | | | ||| | |||||
Sbjct 202480 TCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTA-CTTCTAACGTAAT 202538
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || ||||| || ||||||||||
Sbjct 202539 GGTCTTTCCGGTAAGGGTCTTAACGA 202564
>seq124
Length=395473
Score = 91.5 bits (100), Expect = 1e-12
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 474710 TCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGA 474768
||||||||||| ||||||| | ||| | ||||| | ||||||||||| || || || ||
Sbjct 92698 TCATATCTTGG-CAAGAAGGTCACTCACGCAGTCGTCACTGTTCCAGCCTACTTCAACGA 92640
Query 474769 TTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTAT 474828
| || | ||||||||| ||||| || | ||||| ||| | || || ||||| |
Sbjct 92639 TAACCAGAGATCAGCAACTAAGGATGCCGGTACTATTGCCGGTTTGAACGTCCTACGTGT 92580
Query 474829 TATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| || ||||| || || || || |||| || |||||||| ||||
Sbjct 92579 CGTCAACGAACCTACTGCCGCAGCTATTGCCTACGGTCTTGACAAGA 92533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268139522261900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |