Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq887 165 5e-35 seq700 104 2e-16 seq61 102 5e-16 seq112 96.9 2e-14 seq124 91.5 1e-12 >seq887 Length=503426 Score = 165 bits (182), Expect = 5e-35 Identities = 371/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474327 TTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386 |||| || ||||||||| | ||||| || ||| ||||| | | | | | ||| | Sbjct 278794 TTGCCATAGGTATTGATCTTGGAACCACCTACTCCTGTGTGGGTATCTTCCGTGATGACA 278735 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 | | ||||| |||||||||||||| || || |||| ||||| || | |||| | || | Sbjct 278734 GAATCGAAATTATTGCCAATGACCAGGGCAACCGAACGACACCTTCCTTTGTTGCCTTCA 278675 Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 | || || |||| ||| ||||||||||| || || |||| | || || || | | Sbjct 278674 CCGACACCGAACGTCTGATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAACCCGATCA 278615 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 | || | || |||||||| | |||| ||||| || || | ||| | ||||| Sbjct 278614 ACACGGTCTTCGATGCTAAGCGTCTGATCGGTCGCAAGTTCGCAGATGCTGAGGTCCAGG 278555 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG 474626 |||||||| |||| || || | || || | || ||| || ||| | || | Sbjct 278554 CTGATATGAAGCATTTCCCCTTCACTGTCATTGACCGTGCTGGCAAGCCAGTCGTCGAGG 278495 Query 474627 --CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | || | ||||| | |||||||| |||| ||| |||||||||| ||| |||| Sbjct 278494 TCGAGTTCAAG--GGTGAGAAGAAACAATTCACACCTGAAGAAATTTCTTCCATGATTTT 278437 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | || |||| | | || || ||| |||| ||||| | || | | || || Sbjct 278436 GGTTAAGATGAGAGAGACTGCTGAG-GCATACCTTGGTGGAACCGTCAACAACGCCGTCG 278378 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || |||||||| || |||||||| | ||||| || || || || || | Sbjct 278377 TCACAGTCCCAGCATACTTCTCCGATTCTCAGAGACAAGCCACAAAGGACGCTGGTCTTA 278318 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| || ||| | || || || || || || || ||||| || |||| |||| Sbjct 278317 TTGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCAGCGGCCATTGCATATG 278258 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 278257 GTCTCGACAAGAA 278245 Score = 122 bits (134), Expect = 6e-22 Identities = 519/812 (64%), Gaps = 21/812 (3%) Strand=Plus/Minus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 || ||||| || | || | |||||||| ||||| ||||| ||||| || | || | Sbjct 278144 ACCGCTGGTGACACTCACTTGGGTGGTGAGGATTTCGATAACAGACTCGTCAACCAC--T 278087 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAA 475484 || | || |||||| | ||| |||| ||||| || || |||| || | Sbjct 278086 TCGTCAACGAATTCAAGCGAAAACATAAGAAGGATCTCTCTACCAATGCTCGTGCCCTTC 278027 Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 | ||||| | || |||||||| || || |||||| | || ||||| | | ||||| Sbjct 278026 GTCGTCTCCGCACAGCTTGTGAGCGAGCCAAGCGAACCCTCTCTTCATCCGCACAAACCT 277967 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | | || | || |||||||| || || ||||||| | ||| || || | ||| Sbjct 277966 CCATCGAGATCGACTCTCTTTTCGAGGGTATTGATTTCTACACTTCCATCACCCGTGCTC 277907 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 || ||||| |||| || || || || |||| | || || || | || | Sbjct 277906 GTTTCGAAGAGCTTTGCCAGGACCTTTTCCGATCCACAACTACTCCAGTCGACCGTGTCC 277847 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | ||| | || | |||||||| |||| || || || || || || |||||||| | Sbjct 277846 TTGCTGATGCCAAGATCGACAAATCTAAAGTTCACGAGATCGTCCTCGTCGGAGGTTCCA 277787 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTT 475779 | | ||||||| ||| |||| ||| ||||| || || ||||| || || Sbjct 277786 CTCGTATTCCAAGAATTC-AGAA--GCT--CATCACTGATTACTTCAATGGCAAGGAGCC 277732 Query 475780 AAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 || |||| | || ||||| || |||||||||||||| ||||| ||||| || || Sbjct 277731 CAAC--AAGTCCATCAACCCTGACGAGGCTGTTGCATATGGTGCTGCCGTCCAGGCTGCC 277674 Query 475838 ATTTTATC---AGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACT 475894 ||| | || || | ||| | || || | ||| | || | || || | Sbjct 277673 ATTCTCTCTGGAGATACTTCATCCAAGTCCACCAACGAGATTCTCCTCCTCGATGTTGCG 277614 Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 ||| | || | ||| | || || | ||| || ||||| || || ||| ||||| Sbjct 277613 CCATTGTCCCTCGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAAC 277554 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 || | |||||| ||| || ||| | || || || || | || || || || | | Sbjct 277553 ACCACCATCCCAACCAAGAAGTCAGAGGTCTTCTCTACCTTCTCCGACAACCAGCCTGGT 277494 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || |||||| |||| || ||||| | || ||| || || || ||| | || Sbjct 277493 GTGCTTATCCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTATGGGC 277434 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 | || | || ||||| || || ||||| | || || || ||||| || |||||| Sbjct 277433 AAGTTCGAGCTCACTGGTATCCCACCAGCTCCTCGTGGTGTCCCACAAATCGAGGTTACT 277374 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGT 476166 || ||| ||||||| || || ||| | || || Sbjct 277373 TTCGATCTTGATGCCAACGGAATTATGAACGT 277342 >seq700 Length=197223 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || ||||| ||||||||||||||||| ||||| |||| Sbjct 17526 ATGCTGTTGTCACTGTTCCTGCCTACTTTAACGATTCTCAACGTCAAGCTACTAAGGATG 17585 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||| || ||| | || ||| | ||| | | ||||| ||||| || || || | Sbjct 17586 CTGGTCAAATCGCCGGTTTGAACGTTCTCCGTGTGGTCAATGAGCCAACTGCTGCTGCCC 17645 Query 474855 TTGCTTATGGTCTTGATAAG 474874 |||| ||||| ||||| ||| Sbjct 17646 TTGCATATGGCCTTGAGAAG 17665 >seq61 Length=91600 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||| Sbjct 25945 TCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTG 25886 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| |||||| || || || || | | | || || ||||| || Sbjct 25885 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAA-CCTCGAGGGTGAT 25827 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| ||||| || || || || Sbjct 25826 GGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 25794 >seq112 Length=719005 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| || ||||| || | |||||| || ||| ||| || || ||||||| || Sbjct 202634 ACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATG--TTGTAATCAGAGAGG 202691 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || || |||||||| || ||||| | |||||| ||||| |||||||| Sbjct 202692 GTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATG 202751 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||||||||||| ||||||| || ||||| |||| Sbjct 202752 CCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAG 202797 Score = 86.0 bits (94), Expect = 4e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| ||||||||||| || || || ||||| || ||||| Sbjct 202420 TCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTA 202479 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| ||||| || ||||| || | | | | ||| | ||||| Sbjct 202480 TCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTA-CTTCTAACGTAAT 202538 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762 || || ||||| || |||||||||| Sbjct 202539 GGTCTTTCCGGTAAGGGTCTTAACGA 202564 >seq124 Length=395473 Score = 91.5 bits (100), Expect = 1e-12 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 474710 TCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGA 474768 ||||||||||| ||||||| | ||| | ||||| | ||||||||||| || || || || Sbjct 92698 TCATATCTTGG-CAAGAAGGTCACTCACGCAGTCGTCACTGTTCCAGCCTACTTCAACGA 92640 Query 474769 TTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTAT 474828 | || | ||||||||| ||||| || | ||||| ||| | || || ||||| | Sbjct 92639 TAACCAGAGATCAGCAACTAAGGATGCCGGTACTATTGCCGGTTTGAACGTCCTACGTGT 92580 Query 474829 TATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 | || ||||| || || || || |||| || |||||||| |||| Sbjct 92579 CGTCAACGAACCTACTGCCGCAGCTATTGCCTACGGTCTTGACAAGA 92533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268139522261900