Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq533 93.3 5e-14 >seq533 Length=226427 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| |||||||| ||||| |||| || || ||||||||||||| || ||||| | Sbjct 30418 CATTGCTTCTGCTGCGGCAGTACCTTCGTCCAAGAGAGATGCGTTTGAAATCGGTAAAGC 30477 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || || | || |||||| |||| || | || ||| | | || ||| || Sbjct 30478 TGTGAGATCACAAACAAGAGTTTGGAAATTCAAAAGAGATTCAAGGCGCCCTTGACTGAT 30537 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGA--TTCTCAAGAACGTTTCGC 140036 || | |||||| |||||||| ||||||||| | ||| ||| |||| || || ||| Sbjct 30538 TTCTGGTTGATATGGAGTGTAGCTTGTGTACCATCCTGGACCTTC-CAAG-ACATTCCGC 30595 Query 140037 TGTATGACT 140045 | |||||| Sbjct 30596 TTGATGACT 30604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578991705331000