Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq411 279 6e-70
seq887 102 1e-16
>seq411
Length=256942
Score = 279 bits (308), Expect = 6e-70
Identities = 1176/1822 (65%), Gaps = 49/1822 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| ||| |||| ||||| || | || | || |||| || |||||||||| ||
Sbjct 122940 TACTTCGGTTTCAAGACCCTCGA-ACGATCATACCTTCTCCGCCTCGATGGCAAAATCTG 122882
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| ||| ||| ||||| ||||||| || ||| | ||||| ||||| || || || ||
Sbjct 122881 CGAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGA 122822
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322
| | | |||||||| || |||||| ||| || |||| ||||| | |||
Sbjct 122821 GGCAGCAATTGAGACATATAACCTGATGTCAGGCAAA-TAC-TTCACACACGCTTCGCCA 122764
Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382
|| |||||| ||| || |||||| | || | || |||||| | || | ||
Sbjct 122763 ACACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATG 122704
Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442
||||| || || | |||||||| | || || | | ||||| ||||| |||
Sbjct 122703 AAGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAG 122644
Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502
||||| ||||| || | | |||| | |||||| | || |||
Sbjct 122643 AATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCT 122584
Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562
|| ||||| || | || | ||||| |||| ||||| | || || ||| ||| ||
Sbjct 122583 GGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCC 122524
Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616
| ||||| | || ||| | |||| | || ||| ||| ||||| | ||
Sbjct 122523 AGATATGTTGACCA---GGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAG 122467
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|||||||| || ||| | | |||| |||||| | ||| || || || | |||||
Sbjct 122466 CCATGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAA 122407
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| ||| | | |||||||| | | || ||||| ||||| || ||||||||||| |||
Sbjct 122406 GTTCGCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTT 122347
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796
|| || ||| |||| | || | || || || || |||||||| | || |
Sbjct 122346 GAAAAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTC 122287
Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAAT 75853
||||| || || || || || ||| |||||||| | ||||| | | |||
Sbjct 122286 TATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAA- 122228
Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912
||| | | || | | || ||||| | | |||||| || | || || ||||||||
Sbjct 122227 --GACCAT-CAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGG 122171
Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972
|| || | ||||| |||||||||||||| ||| ||||| ||||| |||||| | ||
Sbjct 122170 AAACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111
Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032
|| || ||||| || || ||||| || ||| | |||||| | | ||||||
Sbjct 122110 TACCATTCGAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGT 122051
Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAAGAGACTCGC 76090
||| || || |||||||| || || ||||| | || || ||||| | || |
Sbjct 122050 CGCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGACATGAACA-AC-GGT 121993
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
|| | ||| | | || || || || || || |||| ||| || || |||
Sbjct 121992 ACCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGTCAAGAACCTGAACAAG 121933
Query 76151 GTCATTGACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAG 76209
|||| || || | || || ||| ||| || || || || | || |||||
Sbjct 121932 ATCATCGAGGTCAACTACTACCCAGTTCCAGA-AGCAAAGAAATCCAACTTCCGTCACAG 121874
Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCTACGCAT 76268
|||||||| | | |||||||||||||| || ||||| || | | ||| || | |||
Sbjct 121873 ACCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTGCGTCTGC-CAT 121815
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
| || ||| ||| |||||| | | || | |||||||| || || || |||||
Sbjct 121814 TCGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCG 121755
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCT--GAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386
| || || ||| | ||| |||| | || | || ||||||| |||||
Sbjct 121754 CTTTGACTGCTTCCGTTGATCTCGCTAAGAAG--CTTGGACCATACGAGACATACGAGGG 121697
Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTC 76444
||||| | || | || | |||||| | |||||||||| || | |||| | ||
Sbjct 121696 ATCTCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGG-GTGTCACTCCAACTGATC 121638
Query 76445 AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504
|| || |||||| ||| ||| ||| |||||| | | ||| | || |||||| |
Sbjct 121637 -TCTGGGATTGGGATTCTCTGAAGCAACAAATCAAGCAATATGGTATCCGCAACAGTTTG 121579
Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTT 76563
| | || || ||||| || ||| ||| |||| |||||||| || ||||||||
Sbjct 121578 CTTGTTGCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCTT 121520
Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623
|| |||||||| | ||||||||| | | ||||| || ||||| | ||
Sbjct 121519 CGAGCCATACACCTCCAACATCTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAAGTCGT 121460
Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683
|||| | | || || || | || || || ||||| | | |||||| |
Sbjct 121459 CAACCCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGAAGAA 121400
Query 76684 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743
| || | || |||||||| ||||||||| | | | || |||| ||| |||||
Sbjct 121399 TAGAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACATCAA 121340
Query 76744 GAATCTCTACCGCACAGTGTGGGAAATC---AAGATGAAAGATGTCATTGACATGGCCGC 76800
| ||||||| || || ||||||||| || | | | || | | ||||| ||
Sbjct 121339 GGCTCTCTACAAGACCGTCTGGGAAATCTCTCAG-CGTACCA--TCGTCCAGATGGCTGC 121283
Query 76801 AGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA 76859
||||||||| |||| |||||||||| |||| ||||| | |||| | ||| |
Sbjct 121282 CGATCGTGGT-GCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCTA 121224
Query 76860 CGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAA 76919
| ||| |||| || | ||||||| | | ||||| ||| ||||| || || |
Sbjct 121223 CAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTGGGA 121164
Query 76920 TGTACTATCTCCGATCAAAGGC 76941
|||||||||||||| ||| |||
Sbjct 121163 TGTACTATCTCCGAACAATGGC 121142
>seq887
Length=503426
Score = 102 bits (112), Expect = 1e-16
Identities = 330/510 (65%), Gaps = 2/510 (0%)
Strand=Plus/Plus
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067
|| || || ||| |||||||||| | ||||| | |||| | | ||||| |
Sbjct 201992 GTCCCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCAAGACAAGTCATCC 202051
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
| || || ||||| | |||| || || || ||||||||||||||| || |||
Sbjct 202052 ACATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCA 202111
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
||| | |||| | |||||||||||||| || |||||| | || || |||||| ||
Sbjct 202112 TTCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAAC 202171
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACT 65247
|| | ||||| || || |||||||| ||| || ||||| ||||||
Sbjct 202172 GAGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC 202231
Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307
||| || | || | | || | | || | || | | ||||| ||||| ||
Sbjct 202232 TTGAAGCATCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATC 202291
Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367
||| | | ||| | || || || || ||| ||| |||| |||||||| | |
Sbjct 202292 GAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTG 202351
Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCC 65427
||| | |||||||||| ||| | |||||||| ||| || || | ||
Sbjct 202352 ATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTT-GGCAACGACAA 202410
Query 65428 A-TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGAC 65486
| | | || | || ||||| ||||| ||||| ||||| |||| || |||||
Sbjct 202411 AGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGAC 202470
Query 65487 CAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
||||||||||||||||| ||||| || ||
Sbjct 202471 AAACTTCTTTGAGAAGCGTGTTGGTGATTA 202500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596562702164000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |