Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq411 279 6e-70 seq887 102 1e-16 >seq411 Length=256942 Score = 279 bits (308), Expect = 6e-70 Identities = 1176/1822 (65%), Gaps = 49/1822 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||| ||||| || | || | || |||| || |||||||||| || Sbjct 122940 TACTTCGGTTTCAAGACCCTCGA-ACGATCATACCTTCTCCGCCTCGATGGCAAAATCTG 122882 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||| ||| ||||| ||||||| || ||| | ||||| ||||| || || || || Sbjct 122881 CGAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGA 122822 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 | | | |||||||| || |||||| ||| || |||| ||||| | ||| Sbjct 122821 GGCAGCAATTGAGACATATAACCTGATGTCAGGCAAA-TAC-TTCACACACGCTTCGCCA 122764 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||| ||| || |||||| | || | || |||||| | || | || Sbjct 122763 ACACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATG 122704 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| || || | |||||||| | || || | | ||||| ||||| ||| Sbjct 122703 AAGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAG 122644 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| ||||| || | | |||| | |||||| | || ||| Sbjct 122643 AATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCT 122584 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | ||||| |||| ||||| | || || ||| ||| || Sbjct 122583 GGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCC 122524 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616 | ||||| | || ||| | |||| | || ||| ||| ||||| | || Sbjct 122523 AGATATGTTGACCA---GGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAG 122467 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| || ||| | | |||| |||||| | ||| || || || | ||||| Sbjct 122466 CCATGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAA 122407 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | ||| | | |||||||| | | || ||||| ||||| || ||||||||||| ||| Sbjct 122406 GTTCGCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTT 122347 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || ||| |||| | || | || || || || |||||||| | || | Sbjct 122346 GAAAAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTC 122287 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAAT 75853 ||||| || || || || || ||| |||||||| | ||||| | | ||| Sbjct 122286 TATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAA- 122228 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | || | | || ||||| | | |||||| || | || || |||||||| Sbjct 122227 --GACCAT-CAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGG 122171 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || || | ||||| |||||||||||||| ||| ||||| ||||| |||||| | || Sbjct 122170 AAACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || || ||||| || || ||||| || ||| | |||||| | | |||||| Sbjct 122110 TACCATTCGAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGT 122051 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAAGAGACTCGC 76090 ||| || || |||||||| || || ||||| | || || ||||| | || | Sbjct 122050 CGCTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGACATGAACA-AC-GGT 121993 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 || | ||| | | || || || || || || |||| ||| || || ||| Sbjct 121992 ACCTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGTCAAGAACCTGAACAAG 121933 Query 76151 GTCATTGACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 |||| || || | || || ||| ||| || || || || | || ||||| Sbjct 121932 ATCATCGAGGTCAACTACTACCCAGTTCCAGA-AGCAAAGAAATCCAACTTCCGTCACAG 121874 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCTACGCAT 76268 |||||||| | | |||||||||||||| || ||||| || | | ||| || | ||| Sbjct 121873 ACCTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTGCGTCTGC-CAT 121815 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 | || ||| ||| |||||| | | || | |||||||| || || || ||||| Sbjct 121814 TCGAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCG 121755 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCT--GAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 | || || ||| | ||| |||| | || | || ||||||| ||||| Sbjct 121754 CTTTGACTGCTTCCGTTGATCTCGCTAAGAAG--CTTGGACCATACGAGACATACGAGGG 121697 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTC 76444 ||||| | || | || | |||||| | |||||||||| || | |||| | || Sbjct 121696 ATCTCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGG-GTGTCACTCCAACTGATC 121638 Query 76445 AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 || || |||||| ||| ||| ||| |||||| | | ||| | || |||||| | Sbjct 121637 -TCTGGGATTGGGATTCTCTGAAGCAACAAATCAAGCAATATGGTATCCGCAACAGTTTG 121579 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTT 76563 | | || || ||||| || ||| ||| |||| |||||||| || |||||||| Sbjct 121578 CTTGTTGCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCTT 121520 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 || |||||||| | ||||||||| | | ||||| || ||||| | || Sbjct 121519 CGAGCCATACACCTCCAACATCTACTCTCGTCGTGTGCTCGCTGGAGAGTTCCAAGTCGT 121460 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA 76683 |||| | | || || || | || || || ||||| | | |||||| | Sbjct 121459 CAACCCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGAAGAA 121400 Query 76684 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743 | || | || |||||||| ||||||||| | | | || |||| ||| ||||| Sbjct 121399 TAGAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACATCAA 121340 Query 76744 GAATCTCTACCGCACAGTGTGGGAAATC---AAGATGAAAGATGTCATTGACATGGCCGC 76800 | ||||||| || || ||||||||| || | | | || | | ||||| || Sbjct 121339 GGCTCTCTACAAGACCGTCTGGGAAATCTCTCAG-CGTACCA--TCGTCCAGATGGCTGC 121283 Query 76801 AGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA 76859 ||||||||| |||| |||||||||| |||| ||||| | |||| | ||| | Sbjct 121282 CGATCGTGGT-GCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCTA 121224 Query 76860 CGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAA 76919 | ||| |||| || | ||||||| | | ||||| ||| ||||| || || | Sbjct 121223 CAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTGGGA 121164 Query 76920 TGTACTATCTCCGATCAAAGGC 76941 |||||||||||||| ||| ||| Sbjct 121163 TGTACTATCTCCGAACAATGGC 121142 >seq887 Length=503426 Score = 102 bits (112), Expect = 1e-16 Identities = 330/510 (65%), Gaps = 2/510 (0%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 || || || ||| |||||||||| | ||||| | |||| | | ||||| | Sbjct 201992 GTCCCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCAAGACAAGTCATCC 202051 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 | || || ||||| | |||| || || || ||||||||||||||| || ||| Sbjct 202052 ACATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCA 202111 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||| | |||| | |||||||||||||| || |||||| | || || |||||| || Sbjct 202112 TTCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAAC 202171 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACT 65247 || | ||||| || || |||||||| ||| || ||||| |||||| Sbjct 202172 GAGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC 202231 Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 ||| || | || | | || | | || | || | | ||||| ||||| || Sbjct 202232 TTGAAGCATCGCCCAAGCAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATC 202291 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367 ||| | | ||| | || || || || ||| ||| |||| |||||||| | | Sbjct 202292 GAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTG 202351 Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCC 65427 ||| | |||||||||| ||| | |||||||| ||| || || | || Sbjct 202352 ATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTT-GGCAACGACAA 202410 Query 65428 A-TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGAC 65486 | | | || | || ||||| ||||| ||||| ||||| |||| || ||||| Sbjct 202411 AGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGAC 202470 Query 65487 CAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||||||| ||||| || || Sbjct 202471 AAACTTCTTTGAGAAGCGTGTTGGTGATTA 202500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562702164000