Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq334 132 1e-25
seq411 122 3e-22
seq511 111 5e-19
seq74 98.7 3e-15
seq489 96.9 1e-14
>seq334
Length=289943
Score = 132 bits (146), Expect = 1e-25
Identities = 342/513 (67%), Gaps = 20/513 (4%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 205307 GCACCGTGGGAAATCATGCAATCACGTTCCATTTCTCCGAAACGAAGACCACCATCTCGC 205248
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG----AGCGGCT 251600
|| | ||| || | ||||| | ||| | | | | |||||| | | ||||
Sbjct 205247 GCACGACCTTCAACTGGCTGTCTAGTCAAAATTTGGACAGGACCTCTAGCACGAGCGTGA 205188
Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
|| ||| || | ||||| || |||||||| ||| | | || || | |||||
Sbjct 205187 ATTTTG----TCGTCGACCATGTGACGAAGACGCTGATAGTAAGTAGGTCCCAAGAAGA- 205133
Query 251661 GCTCGAAGG--CAT-TTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGA 251717
|| || | ||| || || |||||| || ||| |||||||| |||| || |||
Sbjct 205132 -CTTGAGCGTTCATCTTTCT-TCCAGTGTGACCGTGATACATAATTTCGAAGCCTCGAGA 205075
Query 251718 TTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACT 251777
|| || ||| | | | | | | || | | | ||| | ||| || | ||
Sbjct 205074 TTGGTAGCCATGGTCCCGCAAGAGTTTAGATACAGAATCAACCGTGACTTCTGTGAATGG 205015
Query 251778 GGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAG 251837
|| | || || | ||||| || | | || || | || | ||| ||||
Sbjct 205014 AGTTGCATCACCCTCGAGACCACGAAGAGTTGATACCTTACTCAATTGACACTCGATCAG 204955
Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897
|| || || ||||||||| ||||||||||||||||||||||||| || || |
Sbjct 204954 ATGAGCAATTGTCATACGAGATGGAATAGCATGGGGATTGATGATGAGATCAGGAACGAT 204895
Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTT 251954
|| | |||||| |||||||| |||| || ||| || | |||||||| || ||
Sbjct 204894 GCCTTGTCGAGTGAACGGCATATC---TTCCATTCTGTAAGTGATACCAATAGTACCTTT 204838
Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| ||||| ||||||||
Sbjct 204837 CTGTCCGTGACGAGAAGCAAACTTGTCACCAAT 204805
>seq411
Length=256942
Score = 122 bits (134), Expect = 3e-22
Identities = 454/705 (64%), Gaps = 15/705 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||||||| ||||||||| || || ||||| || | ||||||||||||
Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| |||||||||||||| || ||| | ||| |||| ||||| | || ||
Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | | || || || |||| |||| || |
Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGC 122247
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | || |||| ||| | | | || ||||| || ||| || || |||
Sbjct 122248 CTCATACTTCTCGTATAGAGCCT--CGAATTCATCACCATAGACATCTGCAAGACCTGGG 122305
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|||| | |||||| | ||| | ||| | ||| | || ||||||| ||| || |
Sbjct 122306 CACTCGTTGGGGCACATCAGTGTCCATGTGCCATT--CTTTTCAACACGCTTCATGAACA 122363
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985
||| ||| | ||| ||||| || || | || || || | ||||||||
Sbjct 122364 GATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGAT 122423
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
| || || || || | | | || || ||| | || |||||| || || || || |
Sbjct 122424 TTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGA 122483
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
| |||| | |||| |||||||| || ||||| | ||||| || ||||| || |
Sbjct 122484 ATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTC 122543
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
|||||||||| ||||| ||||| |||| || || || ||| | | || | |
Sbjct 122544 TGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGG 122603
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220
|||| | || | || || || |||||||| | ||| ||||| || || ||
Sbjct 122604 CTCGAATTCTGTGGACATTGAGACCGATACCACC--AGCATTCTTAGAGATCATGGCACA 122661
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280
||| | || | | | ||||| |||||| |||||| | ||| | || ||||
Sbjct 122662 AGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCA 122721
Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
|||| | ||| | ||||||| || || ||| ||||| ||
Sbjct 122722 CGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGG 122766
>seq511
Length=229750
Score = 111 bits (122), Expect = 5e-19
Identities = 204/293 (70%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996
|| || |||||||| || || |||||||| ||||| || | ||||||||||
Sbjct 195388 TTGAAACCATCCATTTCCGTCAATATTTGATTGAGTGTAGCCTCTCGTTCATCATTTCCT 195329
Query 288997 CCTCTTGAATCACCCGAAT-CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055
|| | | || || | ||| | |||| |||| ||| |||||||| ||||||||
Sbjct 195328 CCCCCAAAGGAGCCTGACTTCGCACGGGATTTT-CCAATAGCGTCAATTTCATCAATGAA 195270
Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
|| | || |||| || | |||||| ||||| || | ||||| || | || || ||
Sbjct 195269 GATGATGCAGGGAGTGTTCTTTCTCGCCATTGCGAAGAGATCTCTAACTCTCGAAGCACC 195210
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCG--GATACTTGAATGAATGTTACATTT 289173
|| ||| || ||||||| ||||| || ||| || || ||| ||| ||||| ||| | |
Sbjct 195209 AACACCGACGAACATTTCCACAAACTCGGAACCGCTGACACT-GAA-GAATGGTACCTGT 195152
Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| || || || ||| | || | ||| |||||||| || |||||||||||
Sbjct 195151 GACTCTCCAGCAGTGGCCTTTGCTAAAAGAGTCTTACCAGTACCAGGTGGTCC 195099
>seq74
Length=76062
Score = 98.7 bits (108), Expect = 3e-15
Identities = 106/140 (76%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | |||||| ||||| |||| ||||| |||||| | |||||||||
Sbjct 16889 AGAATTTCCTTGAGACGGGGGACACCGAGGGTGACGTT---CTTGGAGGACACACCAGCA 16945
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| ||||| || || | ||| |||| ||| || || ||| ||||| ||||
Sbjct 16946 AAATGGAAGGTATTGAGGGTCATTTGGGTAGCTGGTTCTCCGATAGACTGTGCAGCAAGG 17005
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 17006 ACACCAACCATTTCACCAGG 17025
>seq489
Length=230431
Score = 96.9 bits (106), Expect = 1e-14
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
||||||| || |||| |||||||| ||||||||||||| |||||| |||||||| |||
Sbjct 155924 GCACCGTATGCGATCAGGCAATCACGTTCCATTTCACCGAGACGAAGGCCACCATCACGA 155983
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
| | ||| || | ||| ||||| ||||| | | |||||| || || |||
Sbjct 155984 GATCGACCTTCAGTAGGTTGACGCGTGAGGATGGCACGAGGACCACGAGAACGCGAATGC 156043
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||||| | |||||||||||||| ||||||| | ||||| | ||||||
Sbjct 156044 ATTTTATCTTGCACCATATGCTTGAGTTTCTGGTAGTAGATAGGACCAAAGAAGAT 156099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471800156661725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |