Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq334 132 1e-25 seq411 122 3e-22 seq511 111 5e-19 seq74 98.7 3e-15 seq489 96.9 1e-14 >seq334 Length=289943 Score = 132 bits (146), Expect = 1e-25 Identities = 342/513 (67%), Gaps = 20/513 (4%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 205307 GCACCGTGGGAAATCATGCAATCACGTTCCATTTCTCCGAAACGAAGACCACCATCTCGC 205248 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG----AGCGGCT 251600 || | ||| || | ||||| | ||| | | | | |||||| | | |||| Sbjct 205247 GCACGACCTTCAACTGGCTGTCTAGTCAAAATTTGGACAGGACCTCTAGCACGAGCGTGA 205188 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || ||| || | ||||| || |||||||| ||| | | || || | ||||| Sbjct 205187 ATTTTG----TCGTCGACCATGTGACGAAGACGCTGATAGTAAGTAGGTCCCAAGAAGA- 205133 Query 251661 GCTCGAAGG--CAT-TTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGA 251717 || || | ||| || || |||||| || ||| |||||||| |||| || ||| Sbjct 205132 -CTTGAGCGTTCATCTTTCT-TCCAGTGTGACCGTGATACATAATTTCGAAGCCTCGAGA 205075 Query 251718 TTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACT 251777 || || ||| | | | | | | || | | | ||| | ||| || | || Sbjct 205074 TTGGTAGCCATGGTCCCGCAAGAGTTTAGATACAGAATCAACCGTGACTTCTGTGAATGG 205015 Query 251778 GGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAG 251837 || | || || | ||||| || | | || || | || | ||| |||| Sbjct 205014 AGTTGCATCACCCTCGAGACCACGAAGAGTTGATACCTTACTCAATTGACACTCGATCAG 204955 Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897 || || || ||||||||| ||||||||||||||||||||||||| || || | Sbjct 204954 ATGAGCAATTGTCATACGAGATGGAATAGCATGGGGATTGATGATGAGATCAGGAACGAT 204895 Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTT 251954 || | |||||| |||||||| |||| || ||| || | |||||||| || || Sbjct 204894 GCCTTGTCGAGTGAACGGCATATC---TTCCATTCTGTAAGTGATACCAATAGTACCTTT 204838 Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| ||||| |||||||| Sbjct 204837 CTGTCCGTGACGAGAAGCAAACTTGTCACCAAT 204805 >seq411 Length=256942 Score = 122 bits (134), Expect = 3e-22 Identities = 454/705 (64%), Gaps = 15/705 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||||||| ||||||||| || || ||||| || | |||||||||||| Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| || ||| | ||| |||| ||||| | || || Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| || | Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGC 122247 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | || |||| ||| | | | || ||||| || ||| || || ||| Sbjct 122248 CTCATACTTCTCGTATAGAGCCT--CGAATTCATCACCATAGACATCTGCAAGACCTGGG 122305 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||| | ||| | ||| | || ||||||| ||| || | Sbjct 122306 CACTCGTTGGGGCACATCAGTGTCCATGTGCCATT--CTTTTCAACACGCTTCATGAACA 122363 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 ||| ||| | ||| ||||| || || | || || || | |||||||| Sbjct 122364 GATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGAT 122423 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 | || || || || | | | || || ||| | || |||||| || || || || | Sbjct 122424 TTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGA 122483 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | |||| | |||| |||||||| || ||||| | ||||| || ||||| || | Sbjct 122484 ATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTC 122543 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| ||||| ||||| |||| || || || ||| | | || | | Sbjct 122544 TGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGG 122603 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220 |||| | || | || || || |||||||| | ||| ||||| || || || Sbjct 122604 CTCGAATTCTGTGGACATTGAGACCGATACCACC--AGCATTCTTAGAGATCATGGCACA 122661 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 ||| | || | | | ||||| |||||| |||||| | ||| | || |||| Sbjct 122662 AGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCA 122721 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 |||| | ||| | ||||||| || || ||| ||||| || Sbjct 122722 CGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGG 122766 >seq511 Length=229750 Score = 111 bits (122), Expect = 5e-19 Identities = 204/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 || || |||||||| || || |||||||| ||||| || | |||||||||| Sbjct 195388 TTGAAACCATCCATTTCCGTCAATATTTGATTGAGTGTAGCCTCTCGTTCATCATTTCCT 195329 Query 288997 CCTCTTGAATCACCCGAAT-CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || | | || || | ||| | |||| |||| ||| |||||||| |||||||| Sbjct 195328 CCCCCAAAGGAGCCTGACTTCGCACGGGATTTT-CCAATAGCGTCAATTTCATCAATGAA 195270 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | || |||| || | |||||| ||||| || | ||||| || | || || || Sbjct 195269 GATGATGCAGGGAGTGTTCTTTCTCGCCATTGCGAAGAGATCTCTAACTCTCGAAGCACC 195210 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCG--GATACTTGAATGAATGTTACATTT 289173 || ||| || ||||||| ||||| || ||| || || ||| ||| ||||| ||| | | Sbjct 195209 AACACCGACGAACATTTCCACAAACTCGGAACCGCTGACACT-GAA-GAATGGTACCTGT 195152 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || || || ||| | || | ||| |||||||| || ||||||||||| Sbjct 195151 GACTCTCCAGCAGTGGCCTTTGCTAAAAGAGTCTTACCAGTACCAGGTGGTCC 195099 >seq74 Length=76062 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||| ||||| |||| ||||| |||||| | ||||||||| Sbjct 16889 AGAATTTCCTTGAGACGGGGGACACCGAGGGTGACGTT---CTTGGAGGACACACCAGCA 16945 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| ||||| || || | ||| |||| ||| || || ||| ||||| |||| Sbjct 16946 AAATGGAAGGTATTGAGGGTCATTTGGGTAGCTGGTTCTCCGATAGACTGTGCAGCAAGG 17005 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 17006 ACACCAACCATTTCACCAGG 17025 >seq489 Length=230431 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||||| || |||| |||||||| ||||||||||||| |||||| |||||||| ||| Sbjct 155924 GCACCGTATGCGATCAGGCAATCACGTTCCATTTCACCGAGACGAAGGCCACCATCACGA 155983 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||| || | ||| ||||| ||||| | | |||||| || || ||| Sbjct 155984 GATCGACCTTCAGTAGGTTGACGCGTGAGGATGGCACGAGGACCACGAGAACGCGAATGC 156043 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||| | |||||||||||||| ||||||| | ||||| | |||||| Sbjct 156044 ATTTTATCTTGCACCATATGCTTGAGTTTCTGGTAGTAGATAGGACCAAAGAAGAT 156099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800156661725