Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 159 4e-33
seq411 104 3e-16
seq887 93.3 5e-13
>seq5
Length=149557
Score = 159 bits (176), Expect = 4e-33
Identities = 143/177 (81%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | ||||||| || | ||| ||| | ||||| || | |||||||||
Sbjct 67446 CGACATCGAGGAGTGGGACCAGAAATTTATGC-AGGTCGACCAAGAGATGCTCTTTGAGA 67388
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| ||||||||| |||||||||| || ||||||||||| || ||| | || |||||| | |
Sbjct 67387 TCATCCTCGCCTCCAACTACCTGGATATCAAGCCTCTCCTTGATGTAGGATGCAAGACCG 67328
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 67327 TCGCCAATATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAAACCTTTAACATCA 67271
>seq411
Length=256942
Score = 104 bits (114), Expect = 3e-16
Identities = 179/260 (69%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || | || |||| ||| || || | |||||| || |||| ||||||||
Sbjct 122509 CTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGA 122568
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| |||||| ||||| || | ||| || |||| ||| || | |||| | | ||
Sbjct 122569 GTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGAGACC 122628
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || || ||| ||||| | || || ||||||||||||||||| || ||
Sbjct 122629 GATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATC 122688
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| || |||||||||| | | |||||||| || ||| | || | |||||
Sbjct 122689 AATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCC 122748
Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324
||| |||||| || ||||
Sbjct 122749 GGCAGCGAAGAGTGTTGGCG 122768
>seq887
Length=503426
Score = 93.3 bits (102), Expect = 5e-13
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||| || ||||| |||||||| | || |||||
Sbjct 202509 GCCTTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATG 202450
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| || ||| || || | |
Sbjct 202449 TTCTCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGG 202390
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || || |||||||| ||||| || ||| ||| || |||||||||||
Sbjct 202389 AGAAGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGA 202330
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| |||||| | |||||| || || ||||| ||||
Sbjct 202329 AGAGCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATG 202270
Query 868931 A 868931
|
Sbjct 202269 A 202269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107063290168225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |