Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 159 4e-33 seq411 104 3e-16 seq887 93.3 5e-13 >seq5 Length=149557 Score = 159 bits (176), Expect = 4e-33 Identities = 143/177 (81%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | ||||||| || | ||| ||| | ||||| || | ||||||||| Sbjct 67446 CGACATCGAGGAGTGGGACCAGAAATTTATGC-AGGTCGACCAAGAGATGCTCTTTGAGA 67388 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | ||||||||| |||||||||| || ||||||||||| || ||| | || |||||| | | Sbjct 67387 TCATCCTCGCCTCCAACTACCTGGATATCAAGCCTCTCCTTGATGTAGGATGCAAGACCG 67328 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 67327 TCGCCAATATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAAACCTTTAACATCA 67271 >seq411 Length=256942 Score = 104 bits (114), Expect = 3e-16 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || | || |||| ||| || || | |||||| || |||| |||||||| Sbjct 122509 CTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGA 122568 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| ||||| || | ||| || |||| ||| || | |||| | | || Sbjct 122569 GTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGAGACC 122628 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || || ||| ||||| | || || ||||||||||||||||| || || Sbjct 122629 GATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATC 122688 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || || |||||||||| | | |||||||| || ||| | || | ||||| Sbjct 122689 AATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCC 122748 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 ||| |||||| || |||| Sbjct 122749 GGCAGCGAAGAGTGTTGGCG 122768 >seq887 Length=503426 Score = 93.3 bits (102), Expect = 5e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || ||||| |||||||| | || ||||| Sbjct 202509 GCCTTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATG 202450 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| || ||| || || | | Sbjct 202449 TTCTCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGG 202390 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || || |||||||| ||||| || ||| ||| || ||||||||||| Sbjct 202389 AGAAGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGA 202330 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| |||||| | |||||| || || ||||| |||| Sbjct 202329 AGAGCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATG 202270 Query 868931 A 868931 | Sbjct 202269 A 202269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107063290168225