Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq112 104 2e-17
seq61 89.7 5e-13
seq190 82.4 7e-11
>seq112
Length=719005
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|| || || || || || || || ||||| | | ||||| | || | || |||
Sbjct 202831 ACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAATCC 202772
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| ||
Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| | | | | || ||||| ||||| |||||||| || || || ||
Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652
Query 24908 TTGGT 24912
|||||
Sbjct 202651 TTGGT 202647
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | || || || |||||||| | || || || | ||
Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || |||||| || || || || || || || || || ||
Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||| |||||||| | | || || || |||
Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAAC 201939
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| ||||| ||||||||||||||
Sbjct 201938 ATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCG 201904
>seq61
Length=91600
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || ||||| || || ||||| || || | |
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| |||||||| ||||| || || || || ||
Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | ||||| || || || || || || || | | | | || || || |||
Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || || | || |||| |||| |||||
Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 26017
>seq190
Length=335796
Score = 82.4 bits (90), Expect = 7e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || ||||| || || || || | || ||| | || |
Sbjct 147797 AAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATCGACAAT 147738
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || ||||| |||||||| || ||||| || || || || ||||||||||||||
Sbjct 147737 GTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTGATCTTC 147678
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
||||| || || || |||||| | | | || ||||| ||||| || ||||
Sbjct 147677 GCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAAGG 147623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449892398059000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |