Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq61 134 9e-27
seq112 122 6e-23
seq190 104 2e-17
>seq61
Length=91600
Score = 134 bits (148), Expect = 9e-27
Identities = 172/235 (73%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809
|||||| | || | |||||| || |||| || ||||||||| ||||| ||||| ||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| | || || |||||||| || |||||||| || ||||||||||| | ||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCT 34925
| || |||||||| | || || ||||| || | ||||| || | ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACT 25843
Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
| || || | ||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 25842 CAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGAT 25788
>seq112
Length=719005
Score = 122 bits (134), Expect = 6e-23
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| || | ||| ||||||||| ||||| ||||| |||| | ||||| ||||
Sbjct 202135 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCC 202194
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||| || ||||| ||||||||| | || | |||||||| ||
Sbjct 202195 TCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCT 202254
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || | ||||| ||| | ||| || || | || ||
Sbjct 202255 TGAATCTTCGACTTTAC--AT--TGTCGATGGTATCAGATGACTCAACCTCCAGAGTGAT 202310
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || || |||||||| || |||||||||||
Sbjct 202311 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
Score = 105 bits (116), Expect = 4e-18
Identities = 146/204 (72%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||||||||||||| ||||| || ||| | || | ||
Sbjct 202363 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCT 202422
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| || |||||||||||| | || | |||||||| ||
Sbjct 202423 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCT 202482
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| | ||||||| || | ||| || || | || ||
Sbjct 202483 TGAATCTTCGACTTGAC----GTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAAT 202538
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||||| || |||||||| ||
Sbjct 202539 GGTCTTTCCGGTAAGGGTCTTAAC 202562
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||| | ||||||||||| || ||||| ||||| | | || |||| |||
Sbjct 201910 ACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCC 201969
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
| ||||| || |||||||||| ||| ||||||||| | || | |||||||| || |
Sbjct 201970 AACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGA 202029
Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944
|| ||| || || || |||| || || | ||| || || | || || ||
Sbjct 202030 ATCTTTGACTTAAC--AT--TATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGT 202085
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || | ||||| ||||||||||||||
Sbjct 202086 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 82.4 bits (90), Expect = 5e-11
Identities = 136/194 (70%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| |||| ||| |||||| || ||||| || || || ||| |||| | ||
Sbjct 202644 AGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCC 202703
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||||||||| |||| |||||||| || | || | || ||||||||
Sbjct 202704 TCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 202763
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || |||||| || | ||||| ||| | ||| || |||| || ||
Sbjct 202764 TGAATCTTGGATTTGAC--AT--TGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGAT 202819
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 202820 GGTCTTCCCAGTGA 202833
>seq190
Length=335796
Score = 104 bits (114), Expect = 2e-17
Identities = 136/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| || || || || |||| |||| || |||||||| ||||||||||
Sbjct 147623 CCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGA 147682
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 147683 TCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGAC--AT- 147739
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || |||| || |||||||| ||||| ||||||||
Sbjct 147740 -TGTCGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTG 147798
Query 34964 ACAAAG 34969
|| |||
Sbjct 147799 ACGAAG 147804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325689128322575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |