Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq61 134 9e-27 seq112 122 6e-23 seq190 104 2e-17 >seq61 Length=91600 Score = 134 bits (148), Expect = 9e-27 Identities = 172/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | |||||| || |||| || ||||||||| ||||| ||||| || Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| | || || |||||||| || |||||||| || ||||||||||| | || Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCT 34925 | || |||||||| | || || ||||| || | ||||| || | || Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACT 25843 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | || || | ||| ||||| || |||||||||||||| ||||||||||||||||| Sbjct 25842 CAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGAT 25788 >seq112 Length=719005 Score = 122 bits (134), Expect = 6e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||||||||| ||||| ||||| |||| | ||||| |||| Sbjct 202135 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCC 202194 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || ||||| ||||||||| | || | |||||||| || Sbjct 202195 TCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCT 202254 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| | ||| || || | || || Sbjct 202255 TGAATCTTCGACTTTAC--AT--TGTCGATGGTATCAGATGACTCAACCTCCAGAGTGAT 202310 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || ||||||||||| Sbjct 202311 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 105 bits (116), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||||||||| ||||| || ||| | || | || Sbjct 202363 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCT 202422 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || |||||||||||| | || | |||||||| || Sbjct 202423 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATCT 202482 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| | ||||||| || | ||| || || | || || Sbjct 202483 TGAATCTTCGACTTGAC----GTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAAT 202538 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||||||| || |||||||| || Sbjct 202539 GGTCTTTCCGGTAAGGGTCTTAAC 202562 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||||||||||| || ||||| ||||| | | || |||| ||| Sbjct 201910 ACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCC 201969 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||| || |||||||||| ||| ||||||||| | || | |||||||| || | Sbjct 201970 AACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGA 202029 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || ||| || || || |||| || || | ||| || || | || || || Sbjct 202030 ATCTTTGACTTAAC--AT--TATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGT 202085 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | ||||| |||||||||||||| Sbjct 202086 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| |||||| || ||||| || || || ||| |||| | || Sbjct 202644 AGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCC 202703 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||| |||| |||||||| || | || | || |||||||| Sbjct 202704 TCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 202763 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| ||| | ||| || |||| || || Sbjct 202764 TGAATCTTGGATTTGAC--AT--TGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGAT 202819 Query 34942 GGTCTTTCCCGTGA 34955 |||||| || |||| Sbjct 202820 GGTCTTCCCAGTGA 202833 >seq190 Length=335796 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| || || || || |||| |||| || |||||||| |||||||||| Sbjct 147623 CCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGA 147682 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||||||||| | || | ||||||||||| | || || ||||| || Sbjct 147683 TCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGAC--AT- 147739 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || |||| || |||||||| ||||| |||||||| Sbjct 147740 -TGTCGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTG 147798 Query 34964 ACAAAG 34969 || ||| Sbjct 147799 ACGAAG 147804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689128322575