Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq112 141 7e-29 >seq112 Length=719005 Score = 141 bits (156), Expect = 7e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| ||||| || ||||| ||||| ||||| | | ||||||| Sbjct 202641 CGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCG 202700 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | ||||| | |||||||||||| ||||| || || ||| Sbjct 202701 TCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTG 202760 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||||||| | || | |||||||||| ||||| |||||||| || Sbjct 202761 TCTTG-AATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGAT 202819 Query 29751 AGTTTTGCCAGT 29762 || || ||||| Sbjct 202820 GGTCTTCCCAGT 202831 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || || |||||||| || || | || ||| ||| Sbjct 202359 ACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACC 202418 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || |||||| | || | | |||||| || || ||||||||||| || Sbjct 202419 GTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTT 202478 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||||| | || | |||||| ||| |||||||| | || | Sbjct 202479 ATCTTG-AATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAA 202537 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774 | || || || || | ||| ||||| Sbjct 202538 TGGTCTTTCCGGTAAGGGTCTTAAC 202562 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||| || || ||| || ||||| ||||| || || | ||| | | || Sbjct 201903 ACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACG-TACGGC 201961 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || |||||||| | ||||||| ||||| || || ||||||||||| | Sbjct 201962 CATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCT 202021 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | || || ||| |||| || ||| | || | ||||| || || || || | || Sbjct 202022 TATCCTG-AATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTA 202080 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || || ||||| |||||||| Sbjct 202081 ATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214857255425