Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq112 141 7e-29
>seq112
Length=719005
Score = 141 bits (156), Expect = 7e-29
Identities = 148/192 (77%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || ||||||||||| ||||| || ||||| ||||| ||||| | | |||||||
Sbjct 202641 CGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCG 202700
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || || || || | ||||| | |||||||||||| ||||| || || |||
Sbjct 202701 TCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTG 202760
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| || | ||||||| | || | |||||||||| ||||| |||||||| ||
Sbjct 202761 TCTTG-AATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGAT 202819
Query 29751 AGTTTTGCCAGT 29762
|| || |||||
Sbjct 202820 GGTCTTCCCAGT 202831
Score = 105 bits (116), Expect = 5e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| || || || || |||||||| || || | || ||| |||
Sbjct 202359 ACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACC 202418
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || || |||||| | || | | |||||| || || ||||||||||| ||
Sbjct 202419 GTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTT 202478
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||||| ||| || | ||||| | || | |||||| ||| |||||||| | || |
Sbjct 202479 ATCTTG-AATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACTTCTAACGTAA 202537
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774
| || || || || | ||| |||||
Sbjct 202538 TGGTCTTTCCGGTAAGGGTCTTAAC 202562
Score = 95.1 bits (104), Expect = 9e-15
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629
||||| |||||| || || ||| || ||||| ||||| || || | ||| | | ||
Sbjct 201903 ACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACG-TACGGC 201961
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| || | || |||||||| | ||||||| ||||| || || ||||||||||| |
Sbjct 201962 CATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCT 202021
Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
| || || ||| |||| || ||| | || | ||||| || || || || | ||
Sbjct 202022 TATCCTG-AATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTA 202080
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || ||||| || || || ||||| ||||||||
Sbjct 202081 ATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385214857255425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |