Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq887 201 8e-46
seq700 118 8e-21
seq74 86.0 5e-11
>seq887
Length=503426
Score = 201 bits (222), Expect = 8e-46
Identities = 937/1464 (64%), Gaps = 25/1464 (2%)
Strand=Plus/Plus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || | ||| || |||||||| | ||| || || || || ||||| ||||| || |
Sbjct 277342 ACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACACCACGA 277401
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
|||| |||||||| || | | || | |||| | || || || || ||| |
Sbjct 277402 GGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGT 277461
Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611
| || ||||||||||| | ||||||| || ||| || || || || | || |
Sbjct 277462 TGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAGGTAGAG 277521
Query 281612 AATAC-TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670
|| || |||| | || || || || || |||||||| ||| | ||||||||
Sbjct 277522 AAGACCTCTG-ACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTG 277580
Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TT 281728
|||||||| || || | ||| || || | || | ||||| | |||| ||| | ||
Sbjct 277581 TCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATCTCGTT 277640
Query 281729 TGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787
| | || || | || | ||| ||||| || || || | ||||||||||||||
Sbjct 277641 GGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGC 277700
Query 281788 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG 281847
|||||| || ||||| || | | | || | | || |||||||| ||| | |
Sbjct 277701 AACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCAGTGAT 277760
Query 281848 AAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906
|| | ||| | | | |||||||||| || ||||| || | || || || || || |
Sbjct 277761 GAGCT-TCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACTT 277819
Query 281907 GTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964
||||| || | || | ||| ||| | || | | || || | | ||
Sbjct 277820 TAGATTTGTCGATCTTGGCATCAGCAAGGACACGGT--CGACTGGAGTAGTTGTGGATCG 277877
Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 282022
|| | ||| ||||| |||||||| ||| | || || || | || || |||
Sbjct 277878 GAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCA 277935
Query 282023 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 282082
|| || ||||| | ||| || | || || | ||||| | || ||||| || | ||
Sbjct 277936 ATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTTCGC 277995
Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--T 282140
|| || || ||||| ||||| | || | || | ||| || |||| | | | |
Sbjct 277996 TTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGC--ATTGGTAGAGAGAT 278053
Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200
| | |||| ||||| |||||| || | || | | || || | ||||| ||||
Sbjct 278054 CCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAAT 278113
Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260
| ||||| ||||| | ||| | || | || | | || | ||| | || || ||||
Sbjct 278114 CCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCAA 278173
Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320
| |||||||| ||||| |||||| ||||| | ||| ||||| || || || |
Sbjct 278174 TGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGCT 278233
Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380
| ||| || || || |||||||| |||| || || || || || || || || |
Sbjct 278234 CACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATGA 278293
Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440
||| | ||| || ||||| ||||| || || || || ||||||||||| || ||||
Sbjct 278294 TTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAAT 278353
Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCG 282499
|| || ||||| || || || | ||||| | |||| || | |||| || ||
Sbjct 278354 CGGAGAAGTATGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTATGCC 278412
Query 282500 CTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559
|| || | | |||| ||| |||||||| || ||||||| ||| || | ||||
Sbjct 278413 TCAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGT 278472
Query 282560 TTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618
|| ||| |||| | || || | ||| || | || | ||| || |
Sbjct 278473 TTCTTCTCACCCTTGA-ACTCGACCTCGACGACTGGCTTGCCAGCACGGTCAATGACAGT 278531
Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCATTAAAATCTCTACCAATTA 282677
|| || ||| |||||||| | || || || | || || | | ||| || |
Sbjct 278532 GAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCTGCGAACTTGCGACCGATCA 278590
Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737
|| || ||||| || | || ||| | || || | || | |||| || || ||||
Sbjct 278591 GACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCAT 278650
Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797
||||||||||| |||| || || || || | |||| | || || || || || || || |
Sbjct 278651 CTCCAATCAGACGTTCGGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTGCCCT 278710
Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857
| ||||| ||||||||||| | | | ||| | | | ||| ||||| | || |
Sbjct 278711 GGTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAGGTGG 278770
Query 282858 TTCCTAAATCAATACCAATAGCAA 282881
|||| | ||||||||| || ||||
Sbjct 278771 TTCCAAGATCAATACCTATGGCAA 278794
>seq700
Length=197223
Score = 118 bits (130), Expect = 8e-21
Identities = 196/282 (70%), Gaps = 6/282 (2%)
Strand=Plus/Minus
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
|||||||||||||||||||||| | ||| | ||| |||| | |||| ||||| |
Sbjct 17801 TATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGC 17742
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
| | || | | || || | ||| |||||| ||||| | |||| | |
Sbjct 17741 CCTTTTGGATTTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATA---GACCG 17685
Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371
|| | || ||||| | || || ||||| ||||| |||| |||||||||||||| |
Sbjct 17684 CAATGAT---CTTGTCCTCGTCCTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628
Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431
|||| | | | | ||| || | ||| || ||| || ||||| ||||| ||||| |
Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGATTTGACCAGCATCCTTAGTAGCTTGAC 17568
Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
||| ||||||||||| || ||||||||||| | ||| ||||
Sbjct 17567 GTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGCAT 17526
>seq74
Length=76062
Score = 86.0 bits (94), Expect = 5e-11
Identities = 106/143 (74%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| || |||||||| | |||||||||||||||||| | || ||||||| | || |||
Sbjct 17775 GAGTTCTTCTTCCACGCTATGGCTGGTCGTGAAGGTTTGATCGATACAGCAGTCAAGACT 17716
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA--AACAAG 435250
|| || ||||| || |||||| | |||||||| || |||||| ||| ||||
Sbjct 17715 GCCGAGACTGGGTACATTCAACGTCGTCTTGTCAAAGCTCTCGAAGATGTTATGGCCAAG 17656
Query 435251 AATATGATGGTACAGTGAGAAAT 435273
|| ||||| ||||| ||||||
Sbjct 17655 --TACGATGGCACAGTAAGAAAT 17635
Score = 86.0 bits (94), Expect = 5e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| || ||||| || | |||||||||||||| |||||||| || | |||||||||
Sbjct 19221 GGTAAGGAGGGTCGACTTCGTGGAAATTTGATGGGTAAGCGTGTGGACTTTTCTGCACGT 19162
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397
|| || || || |||||| || | ||||| ||||||| ||||| ||
Sbjct 19161 ACGGTCATCACCGGTGATCCAAACTTGTCTCTCGATGAAGTCGGTGTGCC 19112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740584986409050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |