Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq887 201 8e-46 seq700 118 8e-21 seq74 86.0 5e-11 >seq887 Length=503426 Score = 201 bits (222), Expect = 8e-46 Identities = 937/1464 (64%), Gaps = 25/1464 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || | ||| || |||||||| | ||| || || || || ||||| ||||| || | Sbjct 277342 ACGTTCATAATTCCGTTGGCATCAAGATCGAAAGTAACCTCGATTTGTGGGACACCACGA 277401 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 |||| |||||||| || | | || | |||| | || || || || ||| | Sbjct 277402 GGAGCTGGTGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGT 277461 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 | || ||||||||||| | ||||||| || ||| || || || || | || | Sbjct 277462 TGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGCTGGTTGTCGGAGAAGGTAGAG 277521 Query 281612 AATAC-TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || || |||| | || || || || || |||||||| ||| | |||||||| Sbjct 277522 AAGACCTCTG-ACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTG 277580 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TT 281728 |||||||| || || | ||| || || | || | ||||| | |||| ||| | || Sbjct 277581 TCCACCAGCAGTCTCGATACCGAGGGACAATGGCGCAACATCGAGGAGGAGAATCTCGTT 277640 Query 281729 TGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787 | | || || | || | ||| ||||| || || || | |||||||||||||| Sbjct 277641 GGTGGACTTGGATGAAGTATCTCCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGC 277700 Query 281788 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG 281847 |||||| || ||||| || | | | || | | || |||||||| ||| | | Sbjct 277701 AACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGTAATCAGTGAT 277760 Query 281848 AAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906 || | ||| | | | |||||||||| || ||||| || | || || || || || | Sbjct 277761 GAGCT-TCTGAATTCTTGGAATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACTT 277819 Query 281907 GTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 ||||| || | || | ||| ||| | || | | || || | | || Sbjct 277820 TAGATTTGTCGATCTTGGCATCAGCAAGGACACGGT--CGACTGGAGTAGTTGTGGATCG 277877 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 282022 || | ||| ||||| |||||||| ||| | || || || | || || ||| Sbjct 277878 GAAAAGGTCCTGGCAAAGCTCTTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCA 277935 Query 282023 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 282082 || || ||||| | ||| || | || || | ||||| | || ||||| || | || Sbjct 277936 ATACCCTCGAAAAGAGAGTCGATCTCGATGGAGGTTTGTGCGGATGAAGAGAGGGTTCGC 277995 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--T 282140 || || || ||||| ||||| | || | || | ||| || |||| | | | | Sbjct 277996 TTGGCTCGCTCACAAGCTGTGCGGAGACGACGAAGGGCACGAGC--ATTGGTAGAGAGAT 278053 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | | |||| ||||| |||||| || | || | | || || | ||||| |||| Sbjct 278054 CCTTCTTATGTTTTCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCTGTTATCGAAAT 278113 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 | ||||| ||||| | ||| | || | || | | || | ||| | || || |||| Sbjct 278114 CCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCAA 278173 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | |||||||| ||||| |||||| ||||| | ||| ||||| || || || | Sbjct 278174 TGGTCAAAAGAGACACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGAACGTTTCGCT 278233 Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 | ||| || || || |||||||| |||| || || || || || || || || | Sbjct 278234 CACCCTCTACCTTCTTGTCGAGACCATATGCAATGGCCGCTGCGGTAGGCTCGTTGATGA 278293 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 ||| | ||| || ||||| ||||| || || || || ||||||||||| || |||| Sbjct 278294 TTCGGAGAACGTTGAGACCGGCAATAAGACCAGCGTCCTTTGTGGCTTGTCTCTGAGAAT 278353 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCG 282499 || || ||||| || || || | ||||| | |||| || | |||| || || Sbjct 278354 CGGAGAAGTATGCTGGGACTGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTATGCC 278412 Query 282500 CTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559 || || | | |||| ||| |||||||| || ||||||| ||| || | |||| Sbjct 278413 TCAGCAGTCTCTCTCATCTTAACCAAAATCATGGAAGAAATTTCTTCAGGTGTGAATTGT 278472 Query 282560 TTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 || ||| |||| | || || | ||| || | || | ||| || | Sbjct 278473 TTCTTCTCACCCTTGA-ACTCGACCTCGACGACTGGCTTGCCAGCACGGTCAATGACAGT 278531 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCATTAAAATCTCTACCAATTA 282677 || || ||| |||||||| | || || || | || || | | ||| || | Sbjct 278532 GAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCTGCGAACTTGCGACCGATCA 278590 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || || ||||| || | || ||| | || || | || | |||| || || |||| Sbjct 278591 GACGCTTAGCATCGAAGACCGTGTTGATCGGGTTCATGGCGACCTGATTCTTTGCGGCAT 278650 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 ||||||||||| |||| || || || || | |||| | || || || || || || || | Sbjct 278651 CTCCAATCAGACGTTCGGTGTCGGTGAAGGCAACAAAGGAAGGTGTCGTTCGGTTGCCCT 278710 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 | ||||| ||||||||||| | | | ||| | | | ||| ||||| | || | Sbjct 278711 GGTCATTGGCAATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGAGTAGGTGG 278770 Query 282858 TTCCTAAATCAATACCAATAGCAA 282881 |||| | ||||||||| || |||| Sbjct 278771 TTCCAAGATCAATACCTATGGCAA 278794 >seq700 Length=197223 Score = 118 bits (130), Expect = 8e-21 Identities = 196/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||||||||||||||||||||| | ||| | ||| |||| | |||| ||||| | Sbjct 17801 TATCAAAATCTTCACCTCCCAAGTGAGTGTCTCCGTTTGTAGACTTGACTTCGAAAACGC 17742 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 | | || | | || || | ||| |||||| ||||| | |||| | | Sbjct 17741 CCTTTTGGATTTCAAGAACAGAGATATCGAAGGTTCCTCCACCGAGATCATA---GACCG 17685 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 || | || ||||| | || || ||||| ||||| |||| |||||||||||||| | Sbjct 17684 CAATGAT---CTTGTCCTCGTCCTTCTCAAGGCCATATGCAAGGGCAGCAGCAGTTGGCT 17628 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| | | | | ||| || | ||| || ||| || ||||| ||||| ||||| | Sbjct 17627 CATTGACCACACGGAGAACGTTCAAACCGGCGATTTGACCAGCATCCTTAGTAGCTTGAC 17568 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||| ||||||||||| || ||||||||||| | ||| |||| Sbjct 17567 GTTGAGAATCGTTAAAGTAGGCAGGAACAGTGACAACAGCAT 17526 >seq74 Length=76062 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || |||||||| | |||||||||||||||||| | || ||||||| | || ||| Sbjct 17775 GAGTTCTTCTTCCACGCTATGGCTGGTCGTGAAGGTTTGATCGATACAGCAGTCAAGACT 17716 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA--AACAAG 435250 || || ||||| || |||||| | |||||||| || |||||| ||| |||| Sbjct 17715 GCCGAGACTGGGTACATTCAACGTCGTCTTGTCAAAGCTCTCGAAGATGTTATGGCCAAG 17656 Query 435251 AATATGATGGTACAGTGAGAAAT 435273 || ||||| ||||| |||||| Sbjct 17655 --TACGATGGCACAGTAAGAAAT 17635 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || ||||| || | |||||||||||||| |||||||| || | ||||||||| Sbjct 19221 GGTAAGGAGGGTCGACTTCGTGGAAATTTGATGGGTAAGCGTGTGGACTTTTCTGCACGT 19162 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || || || || |||||| || | ||||| ||||||| ||||| || Sbjct 19161 ACGGTCATCACCGGTGATCCAAACTTGTCTCTCGATGAAGTCGGTGTGCC 19112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740584986409050