Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq112 86.0 6e-12 seq61 84.2 2e-11 >seq112 Length=719005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| ||||||| || || || ||||| ||||||||||| | |||| ||| || Sbjct 202646 AACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTC 202705 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||| || || || || | |||| |||||||||||| ||||| |||||||| ||||| Sbjct 202706 GAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTG 202765 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || ||| | | || | ||||| | | ||||| |||| ||| | ||||| Sbjct 202766 AATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTT 202825 Query 137382 GCCGGTCAATGT 137393 || || | ||| Sbjct 202826 CCCAGTGACTGT 202837 >seq61 Length=91600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| || | ||||| || || || || || |||||||| ||| Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| ||||| || ||||| |||| ||||||||||| || || || Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898 Query 137305 ATGCCTTCTTTGTC 137318 |||||||| ||||| Sbjct 25897 ATGCCTTCCTTGTC 25884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488538351210000