Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq61 105 6e-18 seq112 102 8e-17 >seq61 Length=91600 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||| || || |||||||| Sbjct 25987 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTGCCA 25928 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || |||||||| || || |||||||||||||| ||||| |||| Sbjct 25927 GCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGGACTTG 25868 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || |||| ||||| ||||||||| || || || Sbjct 25867 ACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTC 25808 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 25807 TTGACAAAGATCTGCATG 25790 >seq112 Length=719005 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||| ||||| || ||||| || | ||| | ||||| || Sbjct 202141 AAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCAAGT 202200 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 202201 TGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGAATC 202260 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | | ||| || || | |||| ||| ||||| Sbjct 202261 TTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCTTGCCA 202320 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 202321 GTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| || || || |||||||| | ||| ||| ||||||||| Sbjct 202650 AAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACC-GTCCTCGAG 202708 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||||| || ||| |||| | || ||||| || ||||| |||||||||||||| Sbjct 202709 CTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTC 202762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415210447000