Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq112 111 1e-19
seq61 89.7 3e-13
>seq112
Length=719005
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || || |||||||| ||||| |||||||| |||
Sbjct 201891 ACCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCT 201950
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || ||||| || || || || || ||||| |||||||| ||| | ||
Sbjct 201951 CAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGG 202010
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700
| ||| || || || ||| || || | ||||| ||| |||||| ||| || |
Sbjct 202011 AATACCCTCCTTATCCTGAATCTT-TGACTTAACATTATCAATTGTGTCGGATGACTCAA 202069
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || || || || |||||||||||||||
Sbjct 202070 CCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCATA 202119
Score = 107 bits (118), Expect = 1e-18
Identities = 137/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| |||||| ||| ||||| ||||||||||| ||||| ||||| |||| ||
Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| || |||||||| ||||||||||| |||||||| | || | ||||| ||||| |
Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || | || |||| ||| | ||||| || || || |||| ||||| || ||
Sbjct 202767 ATCTT-GGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTT 202825
Query 33720 ACCTGT 33725
|| ||
Sbjct 202826 CCCAGT 202831
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||||| || ||| ||| || || |||||||| || ||
Sbjct 202119 ACCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 202178
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || || | ||| || ||||| ||||| | |||||||| ||| | ||
Sbjct 202179 TAAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGG 202238
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || || || ||| ||| || | ||| ||| | ||| || ||| || |
Sbjct 202239 GATACCCTCCTTATCTTGAATCTTCGACTTTA-CATTGTCGATGGTATCAGATGACTCAA 202297
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 202298 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 202347
>seq61
Length=91600
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | || | ||| ||||| ||| || || |||||||| ||||||
Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| || | ||| || || || || || | ||| ||||| || | ||
Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| ||| || || | ||| ||| | |||||| || || ||
Sbjct 25897 ATGCCTTCCTTGTCTTGAATCTTGGACTTGA-CATTGTCGATGGTGTCCGAAGACTCAAC 25839
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | || || ||||||||||||||
Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328700294376000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |