Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq61 105 2e-17 seq112 89.7 1e-12 >seq61 Length=91600 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || ||||| ||||| | || || || ||| ||| Sbjct 25794 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGAC 25853 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||| ||| || ||| ||| Sbjct 25854 ACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAGCAA 25913 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||| | ||||| || | || | |||| |||||| || Sbjct 25914 CGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAACATC 25973 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| |||||||| || || Sbjct 25974 CAGAAGGAGTCAACTCTTCATCTCGT 25999 >seq112 Length=719005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || || || || ||||| || ||| ||||| |||| Sbjct 202559 AAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGATAAC 202500 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| || ||| ||| | |||||||| Sbjct 202499 GTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATCTTT 202440 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||| || | || | |||| |||||| | ||||| ||||| Sbjct 202439 GCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCG 202380 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 202379 ACCCTTCAC 202371 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || || |||||| | || || || ||||||||| |||| || || Sbjct 202833 TCACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAAT 202774 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||||||||| || ||||| ||| ||||| ||| | | || |||||||||| Sbjct 202773 CCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAA 202714 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 ||||| | || || || | || | | ||||||||| |||| || ||||| ||||||| Sbjct 202713 AGCAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTC 202654 Query 206372 A 206372 | Sbjct 202653 A 202653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806793576925