Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq61 105 2e-17
seq112 89.7 1e-12
>seq61
Length=91600
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || ||||| || ||||| ||||| | || || || ||| |||
Sbjct 25794 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGAC 25853
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||||||||| || ||||| ||| || ||| |||
Sbjct 25854 ACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAGCAA 25913
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| || ||||| | ||||| || | || | |||| |||||| ||
Sbjct 25914 CGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAACATC 25973
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| |||||||| || ||
Sbjct 25974 CAGAAGGAGTCAACTCTTCATCTCGT 25999
>seq112
Length=719005
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || ||||| || || || || ||||| || ||| ||||| ||||
Sbjct 202559 AAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGATAAC 202500
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| || || || ||| || ||| ||| | ||||||||
Sbjct 202499 GTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATCTTT 202440
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| | ||||| || | || | |||| |||||| | ||||| |||||
Sbjct 202439 GCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCG 202380
Query 206365 ACTCTTCAC 206373
|| ||||||
Sbjct 202379 ACCCTTCAC 202371
Score = 87.8 bits (96), Expect = 4e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251
|||| || || || |||||| | || || || ||||||||| |||| || ||
Sbjct 202833 TCACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAAT 202774
Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311
||||||||||| || ||||| ||| ||||| ||| | | || ||||||||||
Sbjct 202773 CCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAA 202714
Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371
||||| | || || || | || | | ||||||||| |||| || ||||| |||||||
Sbjct 202713 AGCAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTC 202654
Query 206372 A 206372
|
Sbjct 202653 A 202653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181806793576925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |