Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq411 107 2e-18 seq112 84.2 2e-11 >seq411 Length=256942 Score = 107 bits (118), Expect = 2e-18 Identities = 592/928 (64%), Gaps = 37/928 (4%) Strand=Plus/Plus Query 147504 GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT 147563 ||||| || || || | |||||||||| || | ||| || | ||| | ||| || Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127 Query 147564 GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGT 147623 ||| || || ||||| || || ||| |||||||| | || || |||||| ||| | Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187 Query 147624 TTCAACGATAAA---CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTC 147680 ||| | || | || | || | ||| || | || ||| |||||| Sbjct 122188 TTCGAGAATGGAGTACCAA---AGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTC 122244 Query 147681 GTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGG 147740 || ||| |||||| | ||| || || || || ||| ||| ||||| || || Sbjct 122245 AGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGG 122304 Query 147741 ACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAG 147800 |||| | || |||||||| | ||| || | | | | ||| || ||| ||||| Sbjct 122305 GCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAG 122364 Query 147801 ATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATG 147858 ||| || | ||| || ||||| | ||||| || || || | | || | || || Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGC---GCGAACTTCTTCCTTGCCGTG 122421 Query 147859 TTGCGTTTC--AAATTAAGC-ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACG 147915 | |||| | || ||| || | | | | || |||||||| || || | ||||| | Sbjct 122422 ATTT-TTTCGGAGATCAAGGTACTCGAAA-ACATCTGCGTGCCATGGCTCGAGGTAGATG 122479 Query 147916 GCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAAC 147972 || | ||||| ||||| ||| |||||||| |||| | | ||||||| ||| Sbjct 122480 GCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAC 122539 Query 147973 ACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTT-GCTGCC 148031 || | | ||| || | | ||| | | ||||||| ||| | || | ||| || Sbjct 122540 ACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCT-CC 122598 Query 148032 GCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGC 148091 | |||||| | | ||| || || | || || || || | | ||| || || || Sbjct 122599 GGTGGCTCGAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGC 122658 Query 148092 GCAA---TCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAA 148148 ||| | | | |||||| |||| || || || || || | || | | ||| || Sbjct 122659 ACAAGTCTTGAGCG-TGTCGT--AGATACCATCAATACTATCATCCTTCATGTCAATTAA 122715 Query 148149 AAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTG 148208 || |||||| | | ||| | | || || || | ||| || || || ||||| Sbjct 122716 GAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTG 122775 Query 148209 CGTAAACAATTTT--TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCG 148266 || || |||| |||| |||| | ||| |||||||| || | ||||| || ||| Sbjct 122776 TGTGAAGTATTTGCCTGAC--ATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCG 122833 Query 148267 CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTG 148326 ||||||||||| | || || ||||||| ||||||||| || ||||| ||| || ||| Sbjct 122834 CCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTC-GCAGATT--TTG 122890 Query 148327 ---TTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCA 148383 | || |||||| ||| ||||||||| ||| |||| ||||| | ||| | Sbjct 122891 CCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTG 122950 Query 148384 AAATCTAGCTCGTAAGCGATGGCCGCAT 148411 || ||| | ||||| | || |||| || Sbjct 122951 AAGTCTCGATCGTAGACAATAGCCGAAT 122978 >seq112 Length=719005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||||||| | |||||| |||||| Sbjct 202366 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCG 202425 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||| ||||| | | |||| ||||| || || ||||| || || || || ||||| Sbjct 202426 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATC 202481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605689183000