Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq411 107 2e-18
seq112 84.2 2e-11
>seq411
Length=256942
Score = 107 bits (118), Expect = 2e-18
Identities = 592/928 (64%), Gaps = 37/928 (4%)
Strand=Plus/Plus
Query 147504 GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT 147563
||||| || || || | |||||||||| || | ||| || | ||| | ||| ||
Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127
Query 147564 GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGT 147623
||| || || ||||| || || ||| |||||||| | || || |||||| ||| |
Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187
Query 147624 TTCAACGATAAA---CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTC 147680
||| | || | || | || | ||| || | || ||| ||||||
Sbjct 122188 TTCGAGAATGGAGTACCAA---AGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTC 122244
Query 147681 GTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGG 147740
|| ||| |||||| | ||| || || || || ||| ||| ||||| || ||
Sbjct 122245 AGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGG 122304
Query 147741 ACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAG 147800
|||| | || |||||||| | ||| || | | | | ||| || ||| |||||
Sbjct 122305 GCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAG 122364
Query 147801 ATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATG 147858
||| || | ||| || ||||| | ||||| || || || | | || | || ||
Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGC---GCGAACTTCTTCCTTGCCGTG 122421
Query 147859 TTGCGTTTC--AAATTAAGC-ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACG 147915
| |||| | || ||| || | | | | || |||||||| || || | ||||| |
Sbjct 122422 ATTT-TTTCGGAGATCAAGGTACTCGAAA-ACATCTGCGTGCCATGGCTCGAGGTAGATG 122479
Query 147916 GCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAAC 147972
|| | ||||| ||||| ||| |||||||| |||| | | ||||||| |||
Sbjct 122480 GCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAC 122539
Query 147973 ACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTT-GCTGCC 148031
|| | | ||| || | | ||| | | ||||||| ||| | || | ||| ||
Sbjct 122540 ACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCT-CC 122598
Query 148032 GCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGC 148091
| |||||| | | ||| || || | || || || || | | ||| || || ||
Sbjct 122599 GGTGGCTCGAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGC 122658
Query 148092 GCAA---TCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAA 148148
||| | | | |||||| |||| || || || || || | || | | ||| ||
Sbjct 122659 ACAAGTCTTGAGCG-TGTCGT--AGATACCATCAATACTATCATCCTTCATGTCAATTAA 122715
Query 148149 AAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTG 148208
|| |||||| | | ||| | | || || || | ||| || || || |||||
Sbjct 122716 GAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTG 122775
Query 148209 CGTAAACAATTTT--TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCG 148266
|| || |||| |||| |||| | ||| |||||||| || | ||||| || |||
Sbjct 122776 TGTGAAGTATTTGCCTGAC--ATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCG 122833
Query 148267 CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTG 148326
||||||||||| | || || ||||||| ||||||||| || ||||| ||| || |||
Sbjct 122834 CCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTC-GCAGATT--TTG 122890
Query 148327 ---TTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCA 148383
| || |||||| ||| ||||||||| ||| |||| ||||| | ||| |
Sbjct 122891 CCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTG 122950
Query 148384 AAATCTAGCTCGTAAGCGATGGCCGCAT 148411
|| ||| | ||||| | || |||| ||
Sbjct 122951 AAGTCTCGATCGTAGACAATAGCCGAAT 122978
>seq112
Length=719005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || ||||||||||||||| | |||||| ||||||
Sbjct 202366 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCG 202425
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||||| ||||| | | |||| ||||| || || ||||| || || || || |||||
Sbjct 202426 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCCTCCTTATC 202481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605689183000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |