Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq887 129 8e-24
seq411 102 1e-15
>seq887
Length=503426
Score = 129 bits (142), Expect = 8e-24
Identities = 210/299 (70%), Gaps = 5/299 (2%)
Strand=Plus/Plus
Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831
|| ||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | |
Sbjct 201607 GCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTG 201665
Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCA 1455888
|||| | ||| ||||| || | || |||||||| | ||||
Sbjct 201666 ACCTGTCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCA 201725
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
| ||||| || ||||| || ||||||| |||||| || || ||||||| ||| |
Sbjct 201726 TTTCTCACGTTCTTGCCTTCTT-CGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTC 201784
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| ||||| | ||| |||||| | ||||||||||| | || ||||| ||||| |||
Sbjct 201785 GAGCGCTTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATC 201844
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| || || ||||| || ||||||| || ||| | |||||
Sbjct 201845 ATGATGGAGAACATCCACTCCGAGACATACTCCCTGTTGATCGATACATACATTAAGGA 201903
>seq411
Length=256942
Score = 102 bits (112), Expect = 1e-15
Identities = 182/263 (69%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982
|||| || ||||| ||||||||| || | | || ||| |||||||| | | |
Sbjct 122768 CGCCAACACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTG 122709
Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042
||||||||| ||| || || || ||||| |||||||||||| || || | ||||
Sbjct 122708 ACATGAAGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCT 122649
Query 260043 CCAAGGCGGCCGGCGGCATCGGTTT---TGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
| ||| || || || |||||| | || | |||| || | || ||| | || || |
Sbjct 122648 CTAAGAATGCTGGTGGTATCGGTCTCAATGTC-CACAGAA--TTCGAGCCACCGGAGCTT 122592
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
|| | || ||||| |||||| | |||||||| | || || ||||| | || || |||
Sbjct 122591 ACATTGCTGGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACA 122532
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
|||| || | || || ||||||
Sbjct 122531 ACACTGCCAGATATGTTGACCAG 122509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177721982049850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |