Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq887 129 8e-24 seq411 102 1e-15 >seq887 Length=503426 Score = 129 bits (142), Expect = 8e-24 Identities = 210/299 (70%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | | Sbjct 201607 GCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTG 201665 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | ||| ||||| || | || |||||||| | |||| Sbjct 201666 ACCTGTCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCA 201725 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | ||||| || ||||| || ||||||| |||||| || || ||||||| ||| | Sbjct 201726 TTTCTCACGTTCTTGCCTTCTT-CGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTC 201784 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| | ||| |||||| | ||||||||||| | || ||||| ||||| ||| Sbjct 201785 GAGCGCTTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATC 201844 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || || ||||| || ||||||| || ||| | ||||| Sbjct 201845 ATGATGGAGAACATCCACTCCGAGACATACTCCCTGTTGATCGATACATACATTAAGGA 201903 >seq411 Length=256942 Score = 102 bits (112), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| || ||||| ||||||||| || | | || ||| |||||||| | | | Sbjct 122768 CGCCAACACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTG 122709 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||||| ||| || || || ||||| |||||||||||| || || | |||| Sbjct 122708 ACATGAAGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCT 122649 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTT---TGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 | ||| || || || |||||| | || | |||| || | || ||| | || || | Sbjct 122648 CTAAGAATGCTGGTGGTATCGGTCTCAATGTC-CACAGAA--TTCGAGCCACCGGAGCTT 122592 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || ||||| |||||| | |||||||| | || || ||||| | || || ||| Sbjct 122591 ACATTGCTGGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACA 122532 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || | || || |||||| Sbjct 122531 ACACTGCCAGATATGTTGACCAG 122509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177721982049850