Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq112 125 7e-24
seq61 118 1e-21
seq411 104 2e-17
>seq112
Length=719005
Score = 125 bits (138), Expect = 7e-24
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || ||||| |||||||| |||||||| || | |||| || ||| ||||||||
Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || ||||||||||| |||||||| || || |||||||| || |||||||| ||
Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|||||| ||| | ||||| || || || || || ||||| ||||| || || ||
Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGT 202831
Score = 109 bits (120), Expect = 6e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554
|| |||||||| | ||| || ||| |||||||| ||||||||||||| |||| || |
Sbjct 201901 AGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAC-GTACG 201959
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || | ||| ||||| || || ||||| |||||||| || || || || || ||
Sbjct 201960 GCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTC 202019
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || ||||| ||| || || || | ||||||||| || || || || | ||
Sbjct 202020 CTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGT 202079
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || || || || ||||| || || || || |||||
Sbjct 202080 AATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || || || ||||| ||||||||||||||| |
Sbjct 202348 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 202407
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| |||||||| || || ||||| || | ||| ||||| || || ||
Sbjct 202408 AGGGTACGACCGTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGA 202467
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || |||||||| || ||||| || | ||||| || || || ||
Sbjct 202468 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACT 202527
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
|| | |||||||| || ||||| | || |||||||
Sbjct 202528 TCTAACGTAATGGTCTTTCCGGTAAGGGTCTTAACGA 202564
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || ||||| ||||| || ||||||||||| | |||| | || || || ||
Sbjct 202144 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCAAGTTGC 202203
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
||||| || ||||| | |||||||| || || || || || || || |||||||| ||
Sbjct 202204 TTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGAATCTTC 202263
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || ||| | || || || || || || || ||||| ||||| || || ||
Sbjct 202264 GACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCTTGCCAGTC 202323
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| || |||||
Sbjct 202324 AGGGTCTTGACGAAGATCTGCAT 202346
>seq61
Length=91600
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
|||||| | || |||| ||||| || || || || ||||| || ||||||||||||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| |||| | ||| || || || ||||| || || || | ||| ||||| || || ||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|||||||| || |||||||| || ||||| ||| | ||||| || || || ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || |||||||| || || | || || || || || |||||
Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791
>seq411
Length=256942
Score = 104 bits (114), Expect = 2e-17
Identities = 284/429 (66%), Gaps = 7/429 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||| | |||| || || || |||||||||||||| || || || || || |
Sbjct 122871 CAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAGGCAGCAATT 122812
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || || | ||||||| ||| | || || ||||||||||| || | || ||
Sbjct 122811 GAGACATATAACCTGATGTCAGGCAAATACTTCACACACGCTTCGCCAACACTCTTCGCT 122752
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
|| |||||| | | ||| | || ||||| || || | |||| || || ||
Sbjct 122751 GCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAGGATGATAGT 122692
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802
|| || || || ||| ||||||| | || ||| |||| || || || | | || ||
Sbjct 122691 ATTGATGGTATCTACGACACGCT-CAAGACTTGTGCCATGATCTCTAAGAATGCTGGTGG 122633
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGC-CGCATCGTGTCCACCAACG 7861
|| ||||| || || || | || |||| ||| ||| ||| | ||| ||||
Sbjct 122632 TATCGGTCTCAATGTCCACAGAATTCGAGCCACCGG-AGCTTACATTGCTGGCACAAACG 122574
Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921
| || ||| |||| | | || ||| | | |||||||| ||| | | || |||| |
Sbjct 122573 GCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATGTTG 122514
Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978
||||||| ||| ||||| || || |||||||| | ||||| |||||||| |
Sbjct 122513 ACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCAG 122454
Query 7979 ACATTTACG 7987
| ||| ||
Sbjct 122453 ATGTTTTCG 122445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505392556331000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |