Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq112 125 7e-24 seq61 118 1e-21 seq411 104 2e-17 >seq112 Length=719005 Score = 125 bits (138), Expect = 7e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| |||||||| || | |||| || ||| |||||||| Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||||||||| |||||||| || || |||||||| || |||||||| || Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| ||| | ||||| || || || || || ||||| ||||| || || || Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGT 202831 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || |||||||| | ||| || ||| |||||||| ||||||||||||| |||| || | Sbjct 201901 AGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAC-GTACG 201959 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | ||| ||||| || || ||||| |||||||| || || || || || || Sbjct 201960 GCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTC 202019 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| ||| || || || | ||||||||| || || || || | || Sbjct 202020 CTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGT 202079 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || ||||| || || || || ||||| Sbjct 202080 AATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || ||||| ||||||||||||||| | Sbjct 202348 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 202407 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| |||||||| || || ||||| || | ||| ||||| || || || Sbjct 202408 AGGGTACGACCGTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGGA 202467 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | ||||| || || || || Sbjct 202468 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTACT 202527 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || | |||||||| || ||||| | || ||||||| Sbjct 202528 TCTAACGTAATGGTCTTTCCGGTAAGGGTCTTAACGA 202564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| ||||| || ||||||||||| | |||| | || || || || Sbjct 202144 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCAAGTTGC 202203 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| | |||||||| || || || || || || || |||||||| || Sbjct 202204 TTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGAATCTTC 202263 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | || || || || || || || ||||| ||||| || || || Sbjct 202264 GACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCTTGCCAGTC 202323 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 202324 AGGGTCTTGACGAAGATCTGCAT 202346 >seq61 Length=91600 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || |||| ||||| || || || || ||||| || |||||||||||| Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | ||| || || || ||||| || || || | ||| ||||| || || || Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || |||||||| || ||||| ||| | ||||| || || || || Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| || || | || || || || || ||||| Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq411 Length=256942 Score = 104 bits (114), Expect = 2e-17 Identities = 284/429 (66%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || || || |||||||||||||| || || || || || | Sbjct 122871 CAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGAGGCAGCAATT 122812 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || || | ||||||| ||| | || || ||||||||||| || | || || Sbjct 122811 GAGACATATAACCTGATGTCAGGCAAATACTTCACACACGCTTCGCCAACACTCTTCGCT 122752 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || |||||| | | ||| | || ||||| || || | |||| || || || Sbjct 122751 GCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAGGATGATAGT 122692 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || || || ||| ||||||| | || ||| |||| || || || | | || || Sbjct 122691 ATTGATGGTATCTACGACACGCT-CAAGACTTGTGCCATGATCTCTAAGAATGCTGGTGG 122633 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGC-CGCATCGTGTCCACCAACG 7861 || ||||| || || || | || |||| ||| ||| ||| | ||| |||| Sbjct 122632 TATCGGTCTCAATGTCCACAGAATTCGAGCCACCGG-AGCTTACATTGCTGGCACAAACG 122574 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | || ||| |||| | | || ||| | | |||||||| ||| | | || |||| | Sbjct 122573 GCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATGTTG 122514 Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||||| ||| ||||| || || |||||||| | ||||| |||||||| | Sbjct 122513 ACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCAG 122454 Query 7979 ACATTTACG 7987 | ||| || Sbjct 122453 ATGTTTTCG 122445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392556331000