Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq411 307 1e-78
>seq411
Length=256942
Score = 307 bits (340), Expect = 1e-78
Identities = 1203/1879 (64%), Gaps = 33/1879 (2%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| ||||| ||||||| || || | |||| || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | |||| || ||||||||||| || | ||| | ||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||| |||||| |||||| ||| |||| || | ||| || ||||| | |
Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | |||| |||||||| | ||||| | | ||||| ||| |||||| |
Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357
Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | |||||||| || |||||||| | || ||| ||||||| || | || |
Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || | | | | | | || || || | ||| || || |||
Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| | ||| | ||||| ||| || || ||| ||||| || | |||| || ||
Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
||||||||| || ||||| |||||||| || || | ||||| || | | ||||
Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597
Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910
| | |||||| | || ||| | ||||||||| ||||||| ||| ||| |
Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657
Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966
|| | ||||||||| || || || ||| | ||||| | ||||| || ||
Sbjct 121658 CACATATCGTATTGAAGCTCACCCTTCGAGACTGGA----GATCCCTCGTATGTCTCGTA 121713
Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026
||||| || | ||| || ||| || || || ||| || || || ||
Sbjct 121714 TGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTC 121773
Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085
|| |||| | ||||||| |||| || || | |||||||| | | | | |
Sbjct 121774 AAAGATCTGGATGTTGAGATGCTTG-GCCTCAGGTGACTCGAATGGCAGACGCAGAGCCA 121832
Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145
|| |||| || | || ||||| |||| | | |||||||| || | || ||
Sbjct 121833 AGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATT 121892
Query 69146 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTA 69205
| | |||||||||| || || || || | || || || || || || || ||| |
Sbjct 121893 TCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCA 121952
Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACA 69258
| || | || || | || || | || ||| | | || ||| | |||
Sbjct 121953 CAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTC-AACG 122011
Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATAT 69318
| | || || | ||||| | ||||| || ||||||| | | ||
Sbjct 122012 TAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTAC 122071
Query 69319 TGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTC 69378
| | ||||| || || || || | | || || || ||||| | ||| || |||
Sbjct 122072 TCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTC 122131
Query 69379 TTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCG 69438
||| ||| || || |||||||| || || || || | ||||| || | || | ||||
Sbjct 122132 TTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCG 122191
Query 69439 ATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTT 69495
| ||| || | ||||| | || || || ||||||| || ||| |||
Sbjct 122192 AGAATGGAGTACCAAAGTTTCTGTGCCTTGAT---GGTCTTGCGACCCTTGCCCTCAGCC 122248
Query 69496 TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553
||||| || | ||||| |||| ||||||||||| || | ||||| | | || || |
Sbjct 122249 TCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGC 122306
Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613
| || || || ||||||| || ||| ||| | | ||| || ||||| || ||||
Sbjct 122307 ACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGAT 122366
Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673
| || ||||| ||||| |||||||| | | | | |||||| || || |||||
Sbjct 122367 CTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTT 122426
Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733
|| ||||| || |||| | || ||| | |||||||| || || || || || |
Sbjct 122427 TTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATG 122486
Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793
| || ||||| || ||||| ||||| || | |||||||||||||| || | ||||| |
Sbjct 122487 CACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGA 122546
Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853
|||| |||| ||||| || || || || ||||| |||| ||| ||| ||| | || |
Sbjct 122547 GCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC 122606
Query 69854 GAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913
|||| | | | ||||| || || || || | |||||||| | |||||| |
Sbjct 122607 GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCT 122666
Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG 69973
| | ||||| || ||||| || || |||||||| |||||| || | || || ||
Sbjct 122667 TGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAG 122726
Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033
| | ||| ||| || || ||| || | ||| || || ||||| ||||| |||
Sbjct 122727 AAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATT 122786
Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCT 70092
| | || | ||| || ||||| ||||| |||| || |||||| | | | ||||| ||
Sbjct 122787 TGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCG-TGAATGCCA 122845
Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152
| || |||||||| | ||| ||||| || ||||| |||| || | |
Sbjct 122846 ACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGA 122905
Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 70212
||||||||| ||| || || || || || || || | ||| ||||||| |||||
Sbjct 122906 AGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGATCGTAG 122965
Query 70213 ATAATAACAGAATTTAGTT 70231
| |||| | ||||| ||||
Sbjct 122966 ACAATAGCCGAATTGAGTT 122984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686900857617000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |