Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq411 307 1e-78 >seq411 Length=256942 Score = 307 bits (340), Expect = 1e-78 Identities = 1203/1879 (64%), Gaps = 33/1879 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || ||||| ||||||| || || | |||| || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| |||||| ||| |||| || | ||| || ||||| | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | |||| |||||||| | ||||| | | ||||| ||| |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || |||||||| | || ||| ||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | | | | || || || | ||| || || ||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | ||| | ||||| ||| || || ||| ||||| || | |||| || || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||||||||| || ||||| |||||||| || || | ||||| || | | |||| Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597 Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910 | | |||||| | || ||| | ||||||||| ||||||| ||| ||| | Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657 Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966 || | ||||||||| || || || ||| | ||||| | ||||| || || Sbjct 121658 CACATATCGTATTGAAGCTCACCCTTCGAGACTGGA----GATCCCTCGTATGTCTCGTA 121713 Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 ||||| || | ||| || ||| || || || ||| || || || || Sbjct 121714 TGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTC 121773 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085 || |||| | ||||||| |||| || || | |||||||| | | | | | Sbjct 121774 AAAGATCTGGATGTTGAGATGCTTG-GCCTCAGGTGACTCGAATGGCAGACGCAGAGCCA 121832 Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145 || |||| || | || ||||| |||| | | |||||||| || | || || Sbjct 121833 AGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATT 121892 Query 69146 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTA 69205 | | |||||||||| || || || || | || || || || || || || ||| | Sbjct 121893 TCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCA 121952 Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACA 69258 | || | || || | || || | || ||| | | || ||| | ||| Sbjct 121953 CAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTC-AACG 122011 Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATAT 69318 | | || || | ||||| | ||||| || ||||||| | | || Sbjct 122012 TAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTAC 122071 Query 69319 TGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTC 69378 | | ||||| || || || || | | || || || ||||| | ||| || ||| Sbjct 122072 TCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTC 122131 Query 69379 TTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCG 69438 ||| ||| || || |||||||| || || || || | ||||| || | || | |||| Sbjct 122132 TTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCG 122191 Query 69439 ATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTT 69495 | ||| || | ||||| | || || || ||||||| || ||| ||| Sbjct 122192 AGAATGGAGTACCAAAGTTTCTGTGCCTTGAT---GGTCTTGCGACCCTTGCCCTCAGCC 122248 Query 69496 TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 ||||| || | ||||| |||| ||||||||||| || | ||||| | | || || | Sbjct 122249 TCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGC 122306 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 | || || || ||||||| || ||| ||| | | ||| || ||||| || |||| Sbjct 122307 ACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGAT 122366 Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 | || ||||| ||||| |||||||| | | | | |||||| || || ||||| Sbjct 122367 CTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTT 122426 Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733 || ||||| || |||| | || ||| | |||||||| || || || || || | Sbjct 122427 TTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATG 122486 Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793 | || ||||| || ||||| ||||| || | |||||||||||||| || | ||||| | Sbjct 122487 CACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGA 122546 Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853 |||| |||| ||||| || || || || ||||| |||| ||| ||| ||| | || | Sbjct 122547 GCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTC 122606 Query 69854 GAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913 |||| | | | ||||| || || || || | |||||||| | |||||| | Sbjct 122607 GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCT 122666 Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG 69973 | | ||||| || ||||| || || |||||||| |||||| || | || || || Sbjct 122667 TGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAG 122726 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 | | ||| ||| || || ||| || | ||| || || ||||| ||||| ||| Sbjct 122727 AAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATT 122786 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCT 70092 | | || | ||| || ||||| ||||| |||| || |||||| | | | ||||| || Sbjct 122787 TGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCG-TGAATGCCA 122845 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152 | || |||||||| | ||| ||||| || ||||| |||| || | | Sbjct 122846 ACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGA 122905 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 70212 ||||||||| ||| || || || || || || || | ||| ||||||| ||||| Sbjct 122906 AGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGATCGTAG 122965 Query 70213 ATAATAACAGAATTTAGTT 70231 | |||| | ||||| |||| Sbjct 122966 ACAATAGCCGAATTGAGTT 122984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900857617000